Gene annotation
Transcriptome id Sobic.007G077001.1
Synonym -
Functional annotation -
UniProt A0A1Z5R9G0
Pfam PF00847
Panther DB PTHR31677 PTHR31677:SF21
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT1G03800 : ERF domain protein 10
RAP-DB (Rice) LOC_Os01g12440.1 : AP2 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a044109 , Zm00025a011638 , Zm00025a029907 , Zm00025a055961 , Zm00025a049099 , Zm00025a037864
Brachypodium KQK10160 , KQK05591 , KQK05592 , KQJ95602
Barley HORVU1Hr1G067160.1 , HORVU2Hr1G071470.1
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G095600 lipoxygenase (LOX) that catalyzes the first committed step of JA biosynthesis(PubMedID : 31597271)@lipoxygenase protein, putative, expressed K00454: lipoxygenase
2 Sobic.001G077700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.009G071800 6-phosphofructokinase, putative, expressed K00850: pfkA, 6-phosphofructokinase 1
4 Sobic.002G036100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@zinc-finger protein, putative, expressed -
5 Sobic.004G084100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.001G489600 expressed protein -
7 Sobic.002G248100 expressed protein -
8 Sobic.004G305000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger, C3HC4 type domain containing protein, expressed K10664: E3 ubiquitin-protein ligase ATL6/9/15/31/42/55
9 Sobic.008G036000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
10 Sobic.002G203000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.34 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
11 Sobic.004G280900 zinc finger, C3HC4 type domain containing protein, expressed -
12 Sobic.001G473900 Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed K09286: EREBP-like factor
13 Sobic.001G077400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed K01723: hydroperoxide dehydratase
14 Sobic.001G209800 harpin-induced protein 1 domain containing protein, expressed -
15 Sobic.009G217600 STE_MEKK_ste11_MAP3K.19 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
16 Sobic.009G247300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@WRKY11, expressed -
17 Sobic.006G273800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CAF1 family ribonuclease containing protein, putative, expressed K12581: CNOT7_8, CAF1, CCR4-NOT transcription complex subunit 7/8
18 Sobic.003G158600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@abscisic stress-ripening, putative, expressed -
19 Sobic.004G286600 Protecting the plants under varied stress situations(PubMedID : 26536883)@dehydrin, putative, expressed -
20 Sobic.010G234600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@wound induced protein, putative, expressed -


Gene co-expression network
sample Sobic007G077001 Sobic007G077001 Sobic006G095600 Sobic006G095600 Sobic007G077001--Sobic006G095600 Sobic001G077700 Sobic001G077700 Sobic007G077001--Sobic001G077700 Sobic009G071800 Sobic009G071800 Sobic007G077001--Sobic009G071800 Sobic002G036100 Sobic002G036100 Sobic007G077001--Sobic002G036100 Sobic004G084100 Sobic004G084100 Sobic007G077001--Sobic004G084100 Sobic001G489600 Sobic001G489600 Sobic007G077001--Sobic001G489600 Sobic002G248100 Sobic002G248100 Sobic007G077001--Sobic002G248100 Sobic004G305000 Sobic004G305000 Sobic007G077001--Sobic004G305000 Sobic008G036000 Sobic008G036000 Sobic007G077001--Sobic008G036000 Sobic006G095600--Sobic001G489600 Sobic002G203000 Sobic002G203000 Sobic006G095600--Sobic002G203000 Sobic001G051600 Sobic001G051600 Sobic006G095600--Sobic001G051600 Sobic006G095600--Sobic001G077700 Sobic006G095600--Sobic009G071800 Sobic007G057100 Sobic007G057100 Sobic006G095600--Sobic007G057100 Sobic006G095600--Sobic004G084100 Sobic001G473900 Sobic001G473900 Sobic006G095600--Sobic001G473900 Sobic001G476400 Sobic001G476400 Sobic006G095600--Sobic001G476400 Sobic001G077700--Sobic009G071800 Sobic010G234600 Sobic010G234600 Sobic001G077700--Sobic010G234600 Sobic001G077700--Sobic002G203000 Sobic001G077700--Sobic002G248100 Sobic002G294700 Sobic002G294700 Sobic001G077700--Sobic002G294700 Sobic008G177800 Sobic008G177800 Sobic001G077700--Sobic008G177800 Sobic004G286600 Sobic004G286600 Sobic001G077700--Sobic004G286600 Sobic010G234700 Sobic010G234700 Sobic001G077700--Sobic010G234700 Sobic001G077700--Sobic001G489600 Sobic009G071800--Sobic001G077700 Sobic009G071800--Sobic002G203000 Sobic009G071800--Sobic010G234600 Sobic009G071800--Sobic002G248100 Sobic009G071800--Sobic002G294700 Sobic010G076700 Sobic010G076700 Sobic009G071800--Sobic010G076700 Sobic001G398500 Sobic001G398500 Sobic009G071800--Sobic001G398500 Sobic009G071800--Sobic001G473900 Sobic009G071800--Sobic006G095600 Sobic001G077400 Sobic001G077400 Sobic002G036100--Sobic001G077400 Sobic004G280900 Sobic004G280900 Sobic002G036100--Sobic004G280900 Sobic001G538866 Sobic001G538866 Sobic002G036100--Sobic001G538866 Sobic006G165100 Sobic006G165100 Sobic002G036100--Sobic006G165100 Sobic002G140300 Sobic002G140300 Sobic002G036100--Sobic002G140300 Sobic001G259600 Sobic001G259600 Sobic002G036100--Sobic001G259600 Sobic003G313800 Sobic003G313800 Sobic002G036100--Sobic003G313800 Sobic002G036150 Sobic002G036150 Sobic002G036100--Sobic002G036150 Sobic001G040200 Sobic001G040200 Sobic002G036100--Sobic001G040200 Sobic004G084100--Sobic006G095600 Sobic003G158600 Sobic003G158600 Sobic004G084100--Sobic003G158600 Sobic004G084100--Sobic008G036000 Sobic004G084100--Sobic007G077001 Sobic004G084100--Sobic001G489600 Sobic004G084100--Sobic002G203000 Sobic004G084100--Sobic001G077700 Sobic004G084100--Sobic009G071800 Sobic010G076600 Sobic010G076600 Sobic004G084100--Sobic010G076600 Sobic001G489600--Sobic001G051600 Sobic001G489600--Sobic006G095600 Sobic001G489600--Sobic001G077700 Sobic001G489600--Sobic002G203000 Sobic001G489600--Sobic007G057100 Sobic001G489600--Sobic004G280900 Sobic001G489600--Sobic001G476400 Sobic001G489600--Sobic009G071800 Sobic001G489600--Sobic004G286600 Sobic002G248100--Sobic001G077700 Sobic002G248100--Sobic008G177800 Sobic002G248100--Sobic010G234600 Sobic002G248100--Sobic002G294700 Sobic002G248100--Sobic009G071800 Sobic002G248100--Sobic004G286600 Sobic002G248100--Sobic002G203000 Sobic009G255500 Sobic009G255500 Sobic002G248100--Sobic009G255500 Sobic006G231100 Sobic006G231100 Sobic002G248100--Sobic006G231100 Sobic006G184400 Sobic006G184400 Sobic004G305000--Sobic006G184400 Sobic001G192800 Sobic001G192800 Sobic004G305000--Sobic001G192800 Sobic006G273800 Sobic006G273800 Sobic004G305000--Sobic006G273800 Sobic004G305000--Sobic007G077001 Sobic002G217100 Sobic002G217100 Sobic004G305000--Sobic002G217100 Sobic003G353800 Sobic003G353800 Sobic004G305000--Sobic003G353800 Sobic006G210300 Sobic006G210300 Sobic004G305000--Sobic006G210300 Sobic004G305000--Sobic010G076600 Sobic009G217500 Sobic009G217500 Sobic004G305000--Sobic009G217500 Sobic002G197600 Sobic002G197600 Sobic008G036000--Sobic002G197600 Sobic001G209800 Sobic001G209800 Sobic008G036000--Sobic001G209800 Sobic003G268700 Sobic003G268700 Sobic008G036000--Sobic003G268700 Sobic008G036000--Sobic010G076600 Sobic008G036000--Sobic003G158600 Sobic001G462800 Sobic001G462800 Sobic008G036000--Sobic001G462800 Sobic008G036000--Sobic001G077400 Sobic008G036000--Sobic004G084100 Sobic008G036000--Sobic002G036100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.