Gene annotation
Transcriptome id Sobic.003G158600.1
Synonym Sb03g013820
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)" (PubMedID : 27586543)
abscisic stress-ripening, putative, expressed
UniProt C5XJW4
Pfam PF02496
Panther DB PTHR33801 PTHR33801:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006950; response to stress


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os01g72900.1 : abscisic stress-ripening, putative, expressed
MaizeGDB (Corn) Zm00025a020605 , Zm00025a024490 , Zm00025a024491 , Zm00025a024489 , Zm00025a011435
Brachypodium -
Barley HORVU3Hr1G112140.1 , HORVU3Hr1G112140.2 , HORVU3Hr1G112080.5 , HORVU3Hr1G112080.4 , HORVU3Hr1G112080.6 , HORVU3Hr1G112080.1 , HORVU3Hr1G112080.3 , HORVU3Hr1G112080.2 , HORVU3Hr1G112090.2 , HORVU3Hr1G112090.3 , HORVU3Hr1G112090.1 , HORVU3Hr1G112060.2 , HORVU3Hr1G112060.1 , HORVU3Hr1G112050.2 , HORVU3Hr1G112050.3 , HORVU3Hr1G112050.1 , HORVU3Hr1G112030.1 , HORVU3Hr1G112030.3 , HORVU3Hr1G112030.4 , HORVU3Hr1G112030.5
Wheat TraesCS3D02G517600 , TraesCS3D02G517500 , TraesCS3D02G517700 , TraesCS4A02G208400 , TraesCS4D02G109500 , TraesCS4B02G112000 , TraesCS3A02G509700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G084100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
2 Sobic.008G036000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
3 Sobic.001G462800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed -
4 Sobic.002G197600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@TKL_IRAK_DUF26-lg.2 - DUF26 kinases have homology to DUF26 containing loci, expressed -
5 Sobic.003G268700 STE_MEKK_ste11_MAP3K.4 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
6 Sobic.002G021300 bZIP transcription factor domain containing protein, expressed -
7 Sobic.007G077001 - -
8 Sobic.006G095600 lipoxygenase (LOX) that catalyzes the first committed step of JA biosynthesis(PubMedID : 31597271)@lipoxygenase protein, putative, expressed K00454: lipoxygenase
9 Sobic.004G300300 Up-reguralion under drought(PubMedID : 24916767)@homeobox associated leucine zipper, putative, expressed -
10 Sobic.002G135800 chlorophyllase-2, chloroplast precursor, putative, expressed K08099: chlorophyllase
11 Sobic.004G297200 DUF630/DUF632 domains containing protein, putative, expressed -
12 Sobic.010G175200 low-affinity cation transporter, putative, expressed -
13 Sobic.002G344700 remorin, putative, expressed -
14 Sobic.010G272000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@leucine zipper protein-like, putative, expressed -
15 Sobic.001G081600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed -
16 Sobic.002G217100 tyrosine protein kinase domain containing protein, putative, expressed -
17 Sobic.001G473900 Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed K09286: EREBP-like factor
18 Sobic.007G101800 pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha, putative, expressed -
19 Sobic.002G367900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aspartic proteinase nepenthesin precursor, putative, expressed -
20 Sobic.004G268700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed K09843: (+)-abscisic acid 8'-hydroxylase


Gene co-expression network
sample Sobic003G158600 Sobic003G158600 Sobic004G084100 Sobic004G084100 Sobic003G158600--Sobic004G084100 Sobic008G036000 Sobic008G036000 Sobic003G158600--Sobic008G036000 Sobic001G462800 Sobic001G462800 Sobic003G158600--Sobic001G462800 Sobic002G197600 Sobic002G197600 Sobic003G158600--Sobic002G197600 Sobic003G268700 Sobic003G268700 Sobic003G158600--Sobic003G268700 Sobic002G021300 Sobic002G021300 Sobic003G158600--Sobic002G021300 Sobic007G077001 Sobic007G077001 Sobic003G158600--Sobic007G077001 Sobic006G095600 Sobic006G095600 Sobic003G158600--Sobic006G095600 Sobic004G300300 Sobic004G300300 Sobic003G158600--Sobic004G300300 Sobic004G084100--Sobic006G095600 Sobic004G084100--Sobic003G158600 Sobic004G084100--Sobic008G036000 Sobic004G084100--Sobic007G077001 Sobic001G489600 Sobic001G489600 Sobic004G084100--Sobic001G489600 Sobic002G203000 Sobic002G203000 Sobic004G084100--Sobic002G203000 Sobic001G077700 Sobic001G077700 Sobic004G084100--Sobic001G077700 Sobic009G071800 Sobic009G071800 Sobic004G084100--Sobic009G071800 Sobic010G076600 Sobic010G076600 Sobic004G084100--Sobic010G076600 Sobic008G036000--Sobic002G197600 Sobic001G209800 Sobic001G209800 Sobic008G036000--Sobic001G209800 Sobic008G036000--Sobic003G268700 Sobic008G036000--Sobic010G076600 Sobic008G036000--Sobic003G158600 Sobic008G036000--Sobic001G462800 Sobic001G077400 Sobic001G077400 Sobic008G036000--Sobic001G077400 Sobic008G036000--Sobic004G084100 Sobic002G036100 Sobic002G036100 Sobic008G036000--Sobic002G036100 Sobic001G081600 Sobic001G081600 Sobic001G462800--Sobic001G081600 Sobic002G217100 Sobic002G217100 Sobic001G462800--Sobic002G217100 Sobic002G294600 Sobic002G294600 Sobic001G462800--Sobic002G294600 Sobic001G462800--Sobic002G197600 Sobic002G344700 Sobic002G344700 Sobic001G462800--Sobic002G344700 Sobic002G367900 Sobic002G367900 Sobic001G462800--Sobic002G367900 Sobic006G210300 Sobic006G210300 Sobic001G462800--Sobic006G210300 Sobic007G145700 Sobic007G145700 Sobic001G462800--Sobic007G145700 Sobic004G281200 Sobic004G281200 Sobic001G462800--Sobic004G281200 Sobic002G197600--Sobic001G081600 Sobic002G197600--Sobic002G217100 Sobic002G197600--Sobic001G462800 Sobic002G197600--Sobic004G281200 Sobic002G197600--Sobic006G210300 Sobic002G197600--Sobic002G367900 Sobic002G197600--Sobic008G036000 Sobic004G244100 Sobic004G244100 Sobic002G197600--Sobic004G244100 Sobic004G176900 Sobic004G176900 Sobic002G197600--Sobic004G176900 Sobic003G268700--Sobic009G071800 Sobic003G268700--Sobic008G036000 Sobic003G012800 Sobic003G012800 Sobic003G268700--Sobic003G012800 Sobic009G167000 Sobic009G167000 Sobic003G268700--Sobic009G167000 Sobic003G268700--Sobic001G209800 Sobic001G473900 Sobic001G473900 Sobic003G268700--Sobic001G473900 Sobic003G268700--Sobic002G217100 Sobic003G268700--Sobic010G076600 Sobic003G268700--Sobic001G077700 Sobic002G021300--Sobic009G167000 Sobic002G021300--Sobic004G300300 Sobic002G021300--Sobic004G281200 Sobic009G076500 Sobic009G076500 Sobic002G021300--Sobic009G076500 Sobic008G059000 Sobic008G059000 Sobic002G021300--Sobic008G059000 Sobic002G037400 Sobic002G037400 Sobic002G021300--Sobic002G037400 Sobic006G026400 Sobic006G026400 Sobic002G021300--Sobic006G026400 Sobic006G194600 Sobic006G194600 Sobic002G021300--Sobic006G194600 Sobic002G021300--Sobic004G244100 Sobic007G077001--Sobic006G095600 Sobic007G077001--Sobic001G077700 Sobic007G077001--Sobic009G071800 Sobic007G077001--Sobic002G036100 Sobic007G077001--Sobic004G084100 Sobic007G077001--Sobic001G489600 Sobic002G248100 Sobic002G248100 Sobic007G077001--Sobic002G248100 Sobic004G305000 Sobic004G305000 Sobic007G077001--Sobic004G305000 Sobic007G077001--Sobic008G036000 Sobic006G095600--Sobic001G489600 Sobic006G095600--Sobic002G203000 Sobic001G051600 Sobic001G051600 Sobic006G095600--Sobic001G051600 Sobic006G095600--Sobic001G077700 Sobic006G095600--Sobic009G071800 Sobic007G057100 Sobic007G057100 Sobic006G095600--Sobic007G057100 Sobic006G095600--Sobic004G084100 Sobic006G095600--Sobic001G473900 Sobic001G476400 Sobic001G476400 Sobic006G095600--Sobic001G476400 Sobic004G300300--Sobic002G021300 Sobic003G424500 Sobic003G424500 Sobic004G300300--Sobic003G424500 Sobic004G300300--Sobic009G167000 Sobic002G135800 Sobic002G135800 Sobic004G300300--Sobic002G135800 Sobic002G188700 Sobic002G188700 Sobic004G300300--Sobic002G188700 Sobic007G101800 Sobic007G101800 Sobic004G300300--Sobic007G101800 Sobic003G087100 Sobic003G087100 Sobic004G300300--Sobic003G087100 Sobic004G300300--Sobic008G059000 Sobic004G300300--Sobic009G076500
Octagon: transcription factors


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