Gene annotation
| Transcriptome id | Sobic.004G297200.2,Sobic.004G297200.3 |
|---|---|
| Synonym | Sb04g033110 |
| Functional annotation | DUF630/DUF632 domains containing protein, putative, expressed |
| UniProt | A0A194YSH5 |
| Pfam | PF04783 PF04782 |
| Panther DB | PTHR21450 PTHR21450:SF11 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT3G60320 : Protein of unknown function (DUF630 and DUF632) |
|---|---|
| RAP-DB (Rice) | LOC_Os02g43770.1 : DUF630/DUF632 domains containing protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a032188 , Zm00025a020896 |
| Brachypodium | KQK00585 |
| Barley | HORVU6Hr1G062350.2 , HORVU6Hr1G062350.3 , HORVU6Hr1G062350.4 , HORVU6Hr1G062350.5 , HORVU6Hr1G062350.6 |
| Wheat | TraesCS6D02G225400 , TraesCS6A02G243100 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
 |
Find similar expressed genes
 |
| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.010G200700 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein | - |
| 2 | Sobic.010G175200 | low-affinity cation transporter, putative, expressed | - |
| 3 | Sobic.009G247300 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@WRKY11, expressed | - |
| 4 | Sobic.004G042600 | protein kinase domain containing protein, expressed | - |
| 5 | Sobic.003G268700 | STE_MEKK_ste11_MAP3K.4 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed | - |
| 6 | Sobic.003G012800 | AP2 domain containing protein, expressed | - |
| 7 | Sobic.003G363200 | ZOS1-17 - C2H2 zinc finger protein, expressed | - |
| 8 | Sobic.009G066800 | - | - |
| 9 | Sobic.009G044400 | 1-aminocyclopropane-1-carboxylate oxidase, putative, expressed | K05933: aminocyclopropanecarboxylate oxidase |
| 10 | Sobic.003G035700 | "domain confirmed by Pfam database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20499123)@OsIAA2 - Auxin-responsive Aux/IAA gene family member, expressed | K14484: auxin-responsive protein IAA |
| 11 | Sobic.007G011000 | synaptobrevin-related family protein, putative, expressed | - |
| 12 | Sobic.008G036000 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed | - |
| 13 | Sobic.002G036100 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@zinc-finger protein, putative, expressed | - |
| 14 | Sobic.005G139700 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@respiratory burst oxidase, putative, expressed | K13447: respiratory burst oxidase |
| 15 | Sobic.006G228300 | ethylene-responsive protein related, putative, expressed | - |
| 16 | Sobic.002G131800 | copine, putative, expressed | K16280: E3 ubiquitin-protein ligase RGLG |
| 17 | Sobic.010G078600 | - | - |
| 18 | Sobic.003G082000 | Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@hsp20/alpha crystallin family protein, putative, expressed | K13993: HSP20 family protein |
| 19 | Sobic.006G089300 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptide transporter PTR2, putative, expressed | - |
| 20 | Sobic.003G341100 | WRKY24, expressed | K13424: WRKY transcription factor 33 |
Gene co-expression network
Octagon: transcription factors
© 2015- RIKEN, All rights reserved.
