Gene annotation
Transcriptome id Sobic.003G012800.1
Synonym Sb03g001296, CRF3
Functional annotation AP2 domain containing protein, expressed
UniProt A0A1B6Q0S9
Pfam PF00847
Panther DB PTHR31194 PTHR31194:SF16
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT4G27950 : cytokinin response factor 4
RAP-DB (Rice) LOC_Os01g12440.1 : AP2 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a035951 , Zm00025a010335 , Zm00025a010338 , Zm00025a022855 , Zm00025a033320 , Zm00025a005425
Brachypodium KQK09018 , KQK19497 , KQJ94688
Barley HORVU1Hr1G067160.1 , HORVU5Hr1G079980.1 , HORVU3Hr1G030310.1 , HORVU4Hr1G080300.1 , HORVU4Hr1G079630.1 , HORVU4Hr1G000960.1 , HORVU0Hr1G013490.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G200700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
2 Sobic.003G268700 STE_MEKK_ste11_MAP3K.4 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
3 Sobic.003G373000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
4 Sobic.006G089300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptide transporter PTR2, putative, expressed -
5 Sobic.006G228300 ethylene-responsive protein related, putative, expressed -
6 Sobic.001G209800 harpin-induced protein 1 domain containing protein, expressed -
7 Sobic.001G077400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed K01723: hydroperoxide dehydratase
8 Sobic.009G217600 STE_MEKK_ste11_MAP3K.19 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
9 Sobic.002G036100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@zinc-finger protein, putative, expressed -
10 Sobic.003G338900 expressed protein -
11 Sobic.001G441100 immediate-early fungal elicitor protein CMPG1, putative, expressed -
12 Sobic.002G131800 copine, putative, expressed K16280: E3 ubiquitin-protein ligase RGLG
13 Sobic.001G035000 ZOS3-22 - C2H2 zinc finger protein, expressed -
14 Sobic.006G179500 protein kinase APK1B, chloroplast precursor, putative, expressed -
15 Sobic.004G297200 DUF630/DUF632 domains containing protein, putative, expressed -
16 Sobic.002G294700 Trihelix Family(PubMedID : 24864043)@transcription factor like protein, putative, expressed -
17 Sobic.001G290400 no apical meristem protein, putative, expressed -
18 Sobic.009G027900 TKL_IRAK_CR4L.4 - The CR4L subfamily has homology with Crinkly4, expressed -
19 Sobic.006G148000 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
20 Sobic.001G513700 down-regulated TF in developmental senescence(PubMedID : 27586543)@BHLH transcription factor, putative, expressed -


Gene co-expression network
sample Sobic003G012800 Sobic003G012800 Sobic010G200700 Sobic010G200700 Sobic003G012800--Sobic010G200700 Sobic003G268700 Sobic003G268700 Sobic003G012800--Sobic003G268700 Sobic003G373000 Sobic003G373000 Sobic003G012800--Sobic003G373000 Sobic006G089300 Sobic006G089300 Sobic003G012800--Sobic006G089300 Sobic006G228300 Sobic006G228300 Sobic003G012800--Sobic006G228300 Sobic001G209800 Sobic001G209800 Sobic003G012800--Sobic001G209800 Sobic001G077400 Sobic001G077400 Sobic003G012800--Sobic001G077400 Sobic009G217600 Sobic009G217600 Sobic003G012800--Sobic009G217600 Sobic002G036100 Sobic002G036100 Sobic003G012800--Sobic002G036100 Sobic004G297200 Sobic004G297200 Sobic010G200700--Sobic004G297200 Sobic010G200700--Sobic006G089300 Sobic010G200700--Sobic003G012800 Sobic010G200700--Sobic006G228300 Sobic010G200700--Sobic003G373000 Sobic009G066800 Sobic009G066800 Sobic010G200700--Sobic009G066800 Sobic010G200700--Sobic002G036100 Sobic010G245800 Sobic010G245800 Sobic010G200700--Sobic010G245800 Sobic002G131800 Sobic002G131800 Sobic010G200700--Sobic002G131800 Sobic009G071800 Sobic009G071800 Sobic003G268700--Sobic009G071800 Sobic008G036000 Sobic008G036000 Sobic003G268700--Sobic008G036000 Sobic003G268700--Sobic003G012800 Sobic009G167000 Sobic009G167000 Sobic003G268700--Sobic009G167000 Sobic003G268700--Sobic001G209800 Sobic001G473900 Sobic001G473900 Sobic003G268700--Sobic001G473900 Sobic002G217100 Sobic002G217100 Sobic003G268700--Sobic002G217100 Sobic010G076600 Sobic010G076600 Sobic003G268700--Sobic010G076600 Sobic001G077700 Sobic001G077700 Sobic003G268700--Sobic001G077700 Sobic003G373000--Sobic010G200700 Sobic003G373000--Sobic003G012800 Sobic003G373000--Sobic002G036100 Sobic004G286600 Sobic004G286600 Sobic003G373000--Sobic004G286600 Sobic003G373000--Sobic010G245800 Sobic003G373000--Sobic006G089300 Sobic003G373000--Sobic009G066800 Sobic001G513700 Sobic001G513700 Sobic003G373000--Sobic001G513700 Sobic003G373000--Sobic001G077400 Sobic001G040200 Sobic001G040200 Sobic006G089300--Sobic001G040200 Sobic002G359300 Sobic002G359300 Sobic006G089300--Sobic002G359300 Sobic006G179500 Sobic006G179500 Sobic006G089300--Sobic006G179500 Sobic006G089300--Sobic006G228300 Sobic001G538866 Sobic001G538866 Sobic006G089300--Sobic001G538866 Sobic002G140300 Sobic002G140300 Sobic006G089300--Sobic002G140300 Sobic006G089300--Sobic010G200700 Sobic006G089300--Sobic002G036100 Sobic007G151100 Sobic007G151100 Sobic006G089300--Sobic007G151100 Sobic006G228300--Sobic006G089300 Sobic006G228300--Sobic010G200700 Sobic006G228300--Sobic006G179500 Sobic006G228300--Sobic001G040200 Sobic006G228300--Sobic001G538866 Sobic006G228300--Sobic002G140300 Sobic001G095300 Sobic001G095300 Sobic006G228300--Sobic001G095300 Sobic006G228300--Sobic002G131800 Sobic001G341600 Sobic001G341600 Sobic006G228300--Sobic001G341600 Sobic001G209800--Sobic001G077400 Sobic004G280900 Sobic004G280900 Sobic001G209800--Sobic004G280900 Sobic001G209800--Sobic009G217600 Sobic001G035000 Sobic001G035000 Sobic001G209800--Sobic001G035000 Sobic005G037000 Sobic005G037000 Sobic001G209800--Sobic005G037000 Sobic001G441100 Sobic001G441100 Sobic001G209800--Sobic001G441100 Sobic001G209800--Sobic010G076600 Sobic001G209800--Sobic001G341600 Sobic006G274300 Sobic006G274300 Sobic001G209800--Sobic006G274300 Sobic001G077400--Sobic004G280900 Sobic001G077400--Sobic005G037000 Sobic001G077400--Sobic001G209800 Sobic001G077400--Sobic001G441100 Sobic001G077400--Sobic009G217600 Sobic001G077400--Sobic001G035000 Sobic001G077400--Sobic002G036100 Sobic006G165100 Sobic006G165100 Sobic001G077400--Sobic006G165100 Sobic001G077400--Sobic001G341600 Sobic009G217600--Sobic001G441100 Sobic009G217600--Sobic001G341600 Sobic009G217600--Sobic001G077400 Sobic009G217600--Sobic001G035000 Sobic009G217600--Sobic004G280900 Sobic009G217600--Sobic001G209800 Sobic009G217600--Sobic005G037000 Sobic003G353800 Sobic003G353800 Sobic009G217600--Sobic003G353800 Sobic002G278500 Sobic002G278500 Sobic009G217600--Sobic002G278500 Sobic002G036100--Sobic001G077400 Sobic002G036100--Sobic004G280900 Sobic002G036100--Sobic001G538866 Sobic002G036100--Sobic006G165100 Sobic002G036100--Sobic002G140300 Sobic001G259600 Sobic001G259600 Sobic002G036100--Sobic001G259600 Sobic003G313800 Sobic003G313800 Sobic002G036100--Sobic003G313800 Sobic002G036150 Sobic002G036150 Sobic002G036100--Sobic002G036150 Sobic002G036100--Sobic001G040200
Octagon: transcription factors


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