Gene annotation
Transcriptome id Sobic.006G228300.1
Synonym Sb06g029680
Functional annotation ethylene-responsive protein related, putative, expressed
UniProt C5YGN2
Pfam -
Panther DB PTHR16223 PTHR16223:SF37
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G61660 : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os04g53990.1 : ethylene-responsive protein related, putative, expressed
MaizeGDB (Corn) Zm00025a030004 , Zm00025a054762 , Zm00025a009684 , Zm00025a057117
Brachypodium KQJ84799
Barley HORVU2Hr1G117820.5 , HORVU2Hr1G117820.4 , HORVU2Hr1G117820.7 , HORVU2Hr1G117820.6 , HORVU2Hr1G117820.1 , HORVU2Hr1G117820.3 , HORVU2Hr1G117820.2 , HORVU2Hr1G117820.9 , HORVU2Hr1G117820.8 , HORVU2Hr1G117860.1 , HORVU2Hr1G117860.2 , HORVU2Hr1G108480.9 , HORVU2Hr1G108480.8 , HORVU2Hr1G108480.3 , HORVU2Hr1G108480.2 , HORVU2Hr1G108480.1 , HORVU2Hr1G108480.7 , HORVU2Hr1G108480.6 , HORVU2Hr1G108480.10 , HORVU2Hr1G108480.13 , HORVU2Hr1G108480.12 , HORVU2Hr1G108480.11 , HORVU2Hr1G117820.10 , HORVU2Hr1G117820.11
Wheat TraesCS1A02G320300 , TraesCS1A02G320300 , TraesCS2D02G539300 , TraesCS2B02G568700 , TraesCS2A02G538500 , TraesCS2A02G484700 , TraesCS2D02G484600 , TraesCS2B02G510800
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G089300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptide transporter PTR2, putative, expressed -
2 Sobic.010G200700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.006G179500 protein kinase APK1B, chloroplast precursor, putative, expressed -
4 Sobic.001G040200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NAC domain-containing protein 67, putative, expressed -
5 Sobic.001G538866 - -
6 Sobic.002G140300 plastocyanin-like domain containing protein, putative, expressed -
7 Sobic.001G095300 prenylated rab acceptor, putative, expressed -
8 Sobic.002G131800 copine, putative, expressed K16280: E3 ubiquitin-protein ligase RGLG
9 Sobic.001G341600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@tyrosine protein kinase domain containing protein, putative, expressed -
10 Sobic.002G118600 SNARE domain containing protein, putative, expressed K18211: synaptosomal-associated protein 25
11 Sobic.002G036100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@zinc-finger protein, putative, expressed -
12 Sobic.003G012800 AP2 domain containing protein, expressed -
13 Sobic.001G441100 immediate-early fungal elicitor protein CMPG1, putative, expressed -
14 Sobic.002G359300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@ZOS7-07 - C2H2 zinc finger protein, expressed -
15 Sobic.003G429300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@NADPH quinone oxidoreductase, putative, expressed -
16 Sobic.001G035000 ZOS3-22 - C2H2 zinc finger protein, expressed -
17 Sobic.001G147200 DNA-binding protein-like, putative, expressed K10624: E3 ubiquitin-protein ligase RBBP6
18 Sobic.001G077400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed K01723: hydroperoxide dehydratase
19 Sobic.001G290400 no apical meristem protein, putative, expressed -
20 Sobic.003G430400 OsCML31 - Calmodulin-related calcium sensor protein, expressed K13448: calcium-binding protein CML


Gene co-expression network
sample Sobic006G228300 Sobic006G228300 Sobic006G089300 Sobic006G089300 Sobic006G228300--Sobic006G089300 Sobic010G200700 Sobic010G200700 Sobic006G228300--Sobic010G200700 Sobic006G179500 Sobic006G179500 Sobic006G228300--Sobic006G179500 Sobic001G040200 Sobic001G040200 Sobic006G228300--Sobic001G040200 Sobic001G538866 Sobic001G538866 Sobic006G228300--Sobic001G538866 Sobic002G140300 Sobic002G140300 Sobic006G228300--Sobic002G140300 Sobic001G095300 Sobic001G095300 Sobic006G228300--Sobic001G095300 Sobic002G131800 Sobic002G131800 Sobic006G228300--Sobic002G131800 Sobic001G341600 Sobic001G341600 Sobic006G228300--Sobic001G341600 Sobic006G089300--Sobic001G040200 Sobic002G359300 Sobic002G359300 Sobic006G089300--Sobic002G359300 Sobic006G089300--Sobic006G179500 Sobic006G089300--Sobic006G228300 Sobic006G089300--Sobic001G538866 Sobic006G089300--Sobic002G140300 Sobic006G089300--Sobic010G200700 Sobic002G036100 Sobic002G036100 Sobic006G089300--Sobic002G036100 Sobic007G151100 Sobic007G151100 Sobic006G089300--Sobic007G151100 Sobic004G297200 Sobic004G297200 Sobic010G200700--Sobic004G297200 Sobic010G200700--Sobic006G089300 Sobic003G012800 Sobic003G012800 Sobic010G200700--Sobic003G012800 Sobic010G200700--Sobic006G228300 Sobic003G373000 Sobic003G373000 Sobic010G200700--Sobic003G373000 Sobic009G066800 Sobic009G066800 Sobic010G200700--Sobic009G066800 Sobic010G200700--Sobic002G036100 Sobic010G245800 Sobic010G245800 Sobic010G200700--Sobic010G245800 Sobic010G200700--Sobic002G131800 Sobic006G179500--Sobic002G140300 Sobic006G179500--Sobic002G359300 Sobic006G183400 Sobic006G183400 Sobic006G179500--Sobic006G183400 Sobic006G179500--Sobic001G040200 Sobic004G222500 Sobic004G222500 Sobic006G179500--Sobic004G222500 Sobic003G300800 Sobic003G300800 Sobic006G179500--Sobic003G300800 Sobic003G430400 Sobic003G430400 Sobic006G179500--Sobic003G430400 Sobic006G165100 Sobic006G165100 Sobic006G179500--Sobic006G165100 Sobic006G179500--Sobic006G089300 Sobic001G040200--Sobic002G140300 Sobic001G040200--Sobic002G359300 Sobic003G324400 Sobic003G324400 Sobic001G040200--Sobic003G324400 Sobic001G040200--Sobic003G430400 Sobic001G040200--Sobic001G538866 Sobic009G036100 Sobic009G036100 Sobic001G040200--Sobic009G036100 Sobic003G158500 Sobic003G158500 Sobic001G040200--Sobic003G158500 Sobic001G040200--Sobic006G179500 Sobic002G245800 Sobic002G245800 Sobic001G040200--Sobic002G245800 Sobic001G538866--Sobic002G140300 Sobic001G538866--Sobic001G040200 Sobic004G280900 Sobic004G280900 Sobic001G538866--Sobic004G280900 Sobic001G538866--Sobic002G036100 Sobic001G538866--Sobic003G324400 Sobic001G538866--Sobic006G165100 Sobic001G077400 Sobic001G077400 Sobic001G538866--Sobic001G077400 Sobic001G538866--Sobic007G151100 Sobic009G200700 Sobic009G200700 Sobic001G538866--Sobic009G200700 Sobic002G140300--Sobic006G179500 Sobic002G140300--Sobic001G040200 Sobic002G140300--Sobic006G165100 Sobic002G140300--Sobic004G222500 Sobic002G140300--Sobic001G538866 Sobic002G140300--Sobic009G036100 Sobic002G140300--Sobic006G183400 Sobic002G140300--Sobic003G324400 Sobic009G247900 Sobic009G247900 Sobic002G140300--Sobic009G247900 Sobic010G204600 Sobic010G204600 Sobic001G095300--Sobic010G204600 Sobic001G095300--Sobic002G140300 Sobic003G092900 Sobic003G092900 Sobic001G095300--Sobic003G092900 Sobic001G095300--Sobic003G324400 Sobic002G405600 Sobic002G405600 Sobic001G095300--Sobic002G405600 Sobic001G095300--Sobic001G538866 Sobic001G095300--Sobic002G245800 Sobic009G129000 Sobic009G129000 Sobic001G095300--Sobic009G129000 Sobic001G095300--Sobic006G179500 Sobic001G441100 Sobic001G441100 Sobic002G131800--Sobic001G441100 Sobic006G066200 Sobic006G066200 Sobic002G131800--Sobic006G066200 Sobic002G131800--Sobic002G140300 Sobic002G131800--Sobic006G179500 Sobic009G217600 Sobic009G217600 Sobic002G131800--Sobic009G217600 Sobic002G131800--Sobic001G341600 Sobic002G131800--Sobic001G077400 Sobic001G035000 Sobic001G035000 Sobic002G131800--Sobic001G035000 Sobic002G131800--Sobic006G165100 Sobic001G341600--Sobic009G217600 Sobic001G341600--Sobic001G441100 Sobic001G341600--Sobic001G035000 Sobic001G341600--Sobic001G077400 Sobic001G341600--Sobic004G280900 Sobic001G341600--Sobic002G140300 Sobic003G353800 Sobic003G353800 Sobic001G341600--Sobic003G353800 Sobic002G278500 Sobic002G278500 Sobic001G341600--Sobic002G278500 Sobic001G341600--Sobic001G538866
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.