Gene annotation
Transcriptome id Sobic.003G035700.3,Sobic.003G035700.1,Sobic.003G035700.2
Synonym Sb03g003200, SbIAA7, auxin/indole-3-acetic acid (Aux/IAA), IAA26, PAP1
Functional annotation "domain confirmed by Pfam database, expressed in leaf and root, expression induced by IAA treatment" (PubMedID : 20499123)
OsIAA2 - Auxin-responsive Aux/IAA gene family member, expressed
UniProt A0A1W0VVM8 , C5XLZ3 , A0A1W0VVK6
Pfam PF02309
Panther DB PTHR31734 PTHR31734:SF2
NCBI CDD -
KEGG Orthology K14484; auxin-responsive protein IAA
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT3G16500 : phytochrome-associated protein 1
RAP-DB (Rice) LOC_Os05g09480.1 : OsIAA16 - Auxin-responsive Aux/IAA gene family member, expressed
MaizeGDB (Corn) Zm00025a043088 , Zm00025a023057 , Zm00025a037520
Brachypodium KQK07226 , KQK07228 , KQK03106 , KQK07227 , KQK14081 , KQK14082 , KQK14083
Barley HORVU3Hr1G019750.3 , HORVU3Hr1G019750.2 , HORVU3Hr1G019750.7 , HORVU3Hr1G019750.6 , HORVU3Hr1G019750.5 , HORVU3Hr1G019750.4 , HORVU3Hr1G019750.9 , HORVU3Hr1G019750.8 , HORVU3Hr1G019750.10 , HORVU5Hr1G093580.6 , HORVU5Hr1G093580.7 , HORVU5Hr1G093580.4 , HORVU5Hr1G093580.2 , HORVU5Hr1G093580.3 , HORVU5Hr1G093580.8
Wheat TraesCS3A02G108400 , TraesCS3B02G127400 , TraesCS5D02G388300 , TraesCS5D02G388300 , TraesCS5B02G381900 , TraesCS3D02G110200 , TraesCS5A02G378300 , TraesCS5A02G378300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G423500 SbGlu1 promoter sequences(-2000 bp to -1 bp) bound and upregulated by SbSTOP1(PubMedID : 30387379)@"beta-1,3-glucanase, localized throuout cytoplasm and nuclei with no specific subcellular localization"(PubMedID : 25311645)@glycosyl hydrolases family 17, putative, expressed -
2 Sobic.004G147900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Cupin domain containing protein, expressed -
3 Sobic.010G200700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.004G195300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.004G297200 DUF630/DUF632 domains containing protein, putative, expressed -
6 Sobic.010G078600 - -
7 Sobic.001G290400 no apical meristem protein, putative, expressed -
8 Sobic.003G012800 AP2 domain containing protein, expressed -
9 Sobic.001G482700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM domain containing protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
10 Sobic.001G054400 expressed protein -
11 Sobic.009G155200 ZOS5-08 - C2H2 zinc finger protein, expressed -
12 Sobic.004G268700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed K09843: (+)-abscisic acid 8'-hydroxylase
13 Sobic.007G011000 synaptobrevin-related family protein, putative, expressed -
14 Sobic.003G429300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@NADPH quinone oxidoreductase, putative, expressed -
15 Sobic.010G175200 low-affinity cation transporter, putative, expressed -
16 Sobic.004G053200 Cupin domain containing protein, expressed -
17 Sobic.006G089300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptide transporter PTR2, putative, expressed -
18 Sobic.004G042600 protein kinase domain containing protein, expressed -
19 Sobic.006G228300 ethylene-responsive protein related, putative, expressed -
20 Sobic.004G280800 Tannin1 encodes a WD40 protein homologous to the Arabidopsis proanthocyanidin regulator transparent testa glabra1 (TTG1). (PubmedID : 25272193)@WD40 protein(PubMedID : 22699509)@Transcription factor for tannin accumulation in seed(PubMedID : 22699509)@WD domain, G-beta repeat domain containing protein, expressed K11805: DCAF7, DDB1- and CUL4-associated factor 7


Gene co-expression network
sample Sobic003G035700 Sobic003G035700 Sobic003G423500 Sobic003G423500 Sobic003G035700--Sobic003G423500 Sobic004G147900 Sobic004G147900 Sobic003G035700--Sobic004G147900 Sobic010G200700 Sobic010G200700 Sobic003G035700--Sobic010G200700 Sobic004G195300 Sobic004G195300 Sobic003G035700--Sobic004G195300 Sobic004G297200 Sobic004G297200 Sobic003G035700--Sobic004G297200 Sobic010G078600 Sobic010G078600 Sobic003G035700--Sobic010G078600 Sobic001G290400 Sobic001G290400 Sobic003G035700--Sobic001G290400 Sobic003G012800 Sobic003G012800 Sobic003G035700--Sobic003G012800 Sobic001G482700 Sobic001G482700 Sobic003G035700--Sobic001G482700 Sobic003G423500--Sobic003G035700 Sobic010G069200 Sobic010G069200 Sobic003G423500--Sobic010G069200 Sobic001G119000 Sobic001G119000 Sobic003G423500--Sobic001G119000 Sobic001G054400 Sobic001G054400 Sobic003G423500--Sobic001G054400 Sobic007G171000 Sobic007G171000 Sobic003G423500--Sobic007G171000 Sobic003G423500--Sobic010G078600 Sobic003G423500--Sobic004G195300 Sobic003G423500--Sobic004G147900 Sobic009G155200 Sobic009G155200 Sobic003G423500--Sobic009G155200 Sobic007G057100 Sobic007G057100 Sobic004G147900--Sobic007G057100 Sobic004G147900--Sobic003G035700 Sobic004G147900--Sobic001G290400 Sobic004G147900--Sobic009G155200 Sobic004G147900--Sobic003G423500 Sobic004G051166 Sobic004G051166 Sobic004G147900--Sobic004G051166 Sobic003G158500 Sobic003G158500 Sobic004G147900--Sobic003G158500 Sobic001G513700 Sobic001G513700 Sobic004G147900--Sobic001G513700 Sobic004G147900--Sobic007G171000 Sobic010G200700--Sobic004G297200 Sobic006G089300 Sobic006G089300 Sobic010G200700--Sobic006G089300 Sobic010G200700--Sobic003G012800 Sobic006G228300 Sobic006G228300 Sobic010G200700--Sobic006G228300 Sobic003G373000 Sobic003G373000 Sobic010G200700--Sobic003G373000 Sobic009G066800 Sobic009G066800 Sobic010G200700--Sobic009G066800 Sobic002G036100 Sobic002G036100 Sobic010G200700--Sobic002G036100 Sobic010G245800 Sobic010G245800 Sobic010G200700--Sobic010G245800 Sobic002G131800 Sobic002G131800 Sobic010G200700--Sobic002G131800 Sobic004G195300--Sobic006G089300 Sobic002G202600 Sobic002G202600 Sobic004G195300--Sobic002G202600 Sobic002G359300 Sobic002G359300 Sobic004G195300--Sobic002G359300 Sobic004G195300--Sobic010G200700 Sobic004G195300--Sobic010G078600 Sobic004G195300--Sobic003G035700 Sobic004G195300--Sobic001G119000 Sobic004G195300--Sobic009G066800 Sobic004G195300--Sobic001G054400 Sobic004G297200--Sobic010G200700 Sobic010G175200 Sobic010G175200 Sobic004G297200--Sobic010G175200 Sobic009G247300 Sobic009G247300 Sobic004G297200--Sobic009G247300 Sobic004G042600 Sobic004G042600 Sobic004G297200--Sobic004G042600 Sobic003G268700 Sobic003G268700 Sobic004G297200--Sobic003G268700 Sobic004G297200--Sobic003G012800 Sobic003G363200 Sobic003G363200 Sobic004G297200--Sobic003G363200 Sobic004G297200--Sobic009G066800 Sobic009G044400 Sobic009G044400 Sobic004G297200--Sobic009G044400 Sobic006G026700 Sobic006G026700 Sobic010G078600--Sobic006G026700 Sobic010G036800 Sobic010G036800 Sobic010G078600--Sobic010G036800 Sobic010G078600--Sobic004G195300 Sobic010G078600--Sobic006G089300 Sobic010G078600--Sobic003G423500 Sobic010G078600--Sobic002G036100 Sobic010G078600--Sobic003G158500 Sobic007G151100 Sobic007G151100 Sobic010G078600--Sobic007G151100 Sobic010G078600--Sobic003G035700 Sobic002G118600 Sobic002G118600 Sobic001G290400--Sobic002G118600 Sobic002G294700 Sobic002G294700 Sobic001G290400--Sobic002G294700 Sobic001G051800 Sobic001G051800 Sobic001G290400--Sobic001G051800 Sobic004G053200 Sobic004G053200 Sobic001G290400--Sobic004G053200 Sobic003G338900 Sobic003G338900 Sobic001G290400--Sobic003G338900 Sobic001G473900 Sobic001G473900 Sobic001G290400--Sobic001G473900 Sobic010G228000 Sobic010G228000 Sobic001G290400--Sobic010G228000 Sobic005G139700 Sobic005G139700 Sobic001G290400--Sobic005G139700 Sobic001G538866 Sobic001G538866 Sobic001G290400--Sobic001G538866 Sobic003G012800--Sobic010G200700 Sobic003G012800--Sobic003G268700 Sobic003G012800--Sobic003G373000 Sobic003G012800--Sobic006G089300 Sobic003G012800--Sobic006G228300 Sobic001G209800 Sobic001G209800 Sobic003G012800--Sobic001G209800 Sobic001G077400 Sobic001G077400 Sobic003G012800--Sobic001G077400 Sobic009G217600 Sobic009G217600 Sobic003G012800--Sobic009G217600 Sobic003G012800--Sobic002G036100 Sobic001G482700--Sobic004G051166 Sobic002G021300 Sobic002G021300 Sobic001G482700--Sobic002G021300 Sobic004G268700 Sobic004G268700 Sobic001G482700--Sobic004G268700 Sobic008G036000 Sobic008G036000 Sobic001G482700--Sobic008G036000 Sobic001G482700--Sobic001G290400 Sobic001G403600 Sobic001G403600 Sobic001G482700--Sobic001G403600 Sobic001G081600 Sobic001G081600 Sobic001G482700--Sobic001G081600 Sobic002G344700 Sobic002G344700 Sobic001G482700--Sobic002G344700 Sobic002G197600 Sobic002G197600 Sobic001G482700--Sobic002G197600
Octagon: transcription factors


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