Gene annotation
| Transcriptome id | Sobic.001G482700.2,Sobic.001G482700.1 |
|---|---|
| Synonym | JAZ, TIFY10A, JAZ1, Sb01g045180 |
| Functional annotation | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543) tran- scriptional repressor JASMONATE ZIM-DOMAIN (PubMedID : 25711704) ZIM domain containing protein, putative, expressed |
| UniProt | C5WVS7 |
| Pfam | PF09425 PF06200 |
| Panther DB | PTHR33077 PTHR33077:SF16 |
| NCBI CDD | - |
| KEGG Orthology | K13464; jasmonate ZIM domain-containing protein |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT1G19180 : jasmonate-zim-domain protein 1 |
|---|---|
| RAP-DB (Rice) | LOC_Os03g08320.1 : ZIM domain containing protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a000927 |
| Brachypodium | - |
| Barley | HORVU4Hr1G076840.2 , HORVU4Hr1G076840.1 , HORVU4Hr1G076840.7 , HORVU4Hr1G076840.6 , HORVU4Hr1G076840.5 , HORVU4Hr1G076840.4 |
| Wheat | - |
| Populus | - |
JBrowse
| Sobic.001G482700 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.004G051166 | - | - |
| 2 | Sobic.002G021300 | bZIP transcription factor domain containing protein, expressed | - |
| 3 | Sobic.004G268700 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed | K09843: (+)-abscisic acid 8'-hydroxylase |
| 4 | Sobic.008G036000 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed | - |
| 5 | Sobic.001G290400 | no apical meristem protein, putative, expressed | - |
| 6 | Sobic.001G403600 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DUF538 domain containing protein, putative, expressed | - |
| 7 | Sobic.001G081600 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed | - |
| 8 | Sobic.002G344700 | remorin, putative, expressed | - |
| 9 | Sobic.002G197600 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@TKL_IRAK_DUF26-lg.2 - DUF26 kinases have homology to DUF26 containing loci, expressed | - |
| 10 | Sobic.004G084100 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein | - |
| 11 | Sobic.006G210300 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed | - |
| 12 | Sobic.004G280800 | Tannin1 encodes a WD40 protein homologous to the Arabidopsis proanthocyanidin regulator transparent testa glabra1 (TTG1). (PubmedID : 25272193)@WD40 protein(PubMedID : 22699509)@Transcription factor for tannin accumulation in seed(PubMedID : 22699509)@WD domain, G-beta repeat domain containing protein, expressed | K11805: DCAF7, DDB1- and CUL4-associated factor 7 |
| 13 | Sobic.002G118600 | SNARE domain containing protein, putative, expressed | K18211: synaptosomal-associated protein 25 |
| 14 | Sobic.006G095600 | lipoxygenase (LOX) that catalyzes the first committed step of JA biosynthesis(PubMedID : 31597271)@lipoxygenase protein, putative, expressed | K00454: lipoxygenase |
| 15 | Sobic.001G473900 | Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed | K09286: EREBP-like factor |
| 16 | Sobic.003G035700 | "domain confirmed by Pfam database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20499123)@OsIAA2 - Auxin-responsive Aux/IAA gene family member, expressed | K14484: auxin-responsive protein IAA |
| 17 | Sobic.004G281200 | chitin-inducible gibberellin-responsive protein 2, putative, expressed | - |
| 18 | Sobic.002G188700 | armadillo/beta-catenin repeat family protein, putative, expressed | - |
| 19 | Sobic.004G300300 | Up-reguralion under drought(PubMedID : 24916767)@homeobox associated leucine zipper, putative, expressed | - |
| 20 | Sobic.002G217100 | tyrosine protein kinase domain containing protein, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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