Gene annotation
| Transcriptome id | Sobic.002G188700.1 |
|---|---|
| Synonym | Sb02g023630 |
| Functional annotation | armadillo/beta-catenin repeat family protein, putative, expressed |
| UniProt | A0A1B6QCA8 |
| Pfam | PF00514 PF04564 |
| Panther DB | PTHR23315 PTHR23315:SF116 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | GO:0005515; protein binding GO:0016567protein ubiquitination GO:0004842ubiquitin-protein transferase activity |
Orthologs (automatic annotation)
| TAIR | AT1G60190 : ARM repeat superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os09g21120.1 : armadillo/beta-catenin repeat family protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a046825 |
| Brachypodium | KQK05759 , KQJ90090 , PNT68096 |
| Barley | HORVU5Hr1G059280.1 |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
 |
Find similar expressed genes
 |
| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.004G268700 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed | K09843: (+)-abscisic acid 8'-hydroxylase |
| 2 | Sobic.009G167000 | expressed protein | - |
| 3 | Sobic.002G021300 | bZIP transcription factor domain containing protein, expressed | - |
| 4 | Sobic.004G300300 | Up-reguralion under drought(PubMedID : 24916767)@homeobox associated leucine zipper, putative, expressed | - |
| 5 | Sobic.003G082000 | Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@hsp20/alpha crystallin family protein, putative, expressed | K13993: HSP20 family protein |
| 6 | Sobic.008G058900 | amino acid transporter, putative, expressed | - |
| 7 | Sobic.009G076500 | expressed protein | - |
| 8 | Sobic.006G208100 | maintain optimal Na+/K+ (PubmedID : 24325391)@Up-reguralion under drought(PubMedID : 24916767)@OsHKT1@4 - Na+ transporter, expressed | - |
| 9 | Sobic.010G201200 | expressed protein | - |
| 10 | Sobic.001G482700 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM domain containing protein, putative, expressed | K13464: jasmonate ZIM domain-containing protein |
| 11 | Sobic.004G244100 | glycosyl transferase 8 domain containing protein, putative, expressed | - |
| 12 | Sobic.009G057400 | cytochrome c oxidase-related, putative, expressed | K02266: cytochrome c oxidase subunit 6a |
| 13 | Sobic.003G424500 | Putative uncharacterized protein(PubMedID : 24906815)@expressed protein | - |
| 14 | Sobic.009G030600 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@TKL_IRAK_DUF26-lf.3 - DUF26 kinases have homology to DUF26 containing loci, expressed | - |
| 15 | Sobic.010G200700 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein | - |
| 16 | Sobic.003G348700 | hydrolase, alpha/beta fold family domain containing protein, expressed | - |
| 17 | Sobic.003G268900 | STE_MEKK_ste11_MAP3K.6 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed | - |
| 18 | Sobic.004G176900 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@STE_MEKK_ste11_MAP3K.9 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed | - |
| 19 | Sobic.003G363200 | ZOS1-17 - C2H2 zinc finger protein, expressed | - |
| 20 | Sobic.002G012800 | oxidoreductase, aldo/keto reductase family protein, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
© 2015- RIKEN, All rights reserved.
