Gene annotation
| Transcriptome id | Sobic.009G057400.1 |
|---|---|
| Synonym | Sb09g004850 |
| Functional annotation | cytochrome c oxidase-related, putative, expressed |
| UniProt | C5Z101 |
| Pfam | - |
| Panther DB | PTHR11504 |
| NCBI CDD | KOG3469; Cytochrome c oxidase, subunit VIa/COX13 |
| KEGG Orthology | K02266; cytochrome c oxidase subunit 6a |
| Gene Ontology | GO:0005751; mitochondrial respiratory chain complex IV GO:0005743mitochondrial inner membrane GO:0004129cytochrome-c oxidase activity |
Orthologs (automatic annotation)
| TAIR | AT4G37830 : cytochrome c oxidase-related |
|---|---|
| RAP-DB (Rice) | LOC_Os03g56190.1 : cytochrome c oxidase-related, putative, expressed |
| MaizeGDB (Corn) | - |
| Brachypodium | - |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.002G219200 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@plant viral response family protein, putative, expressed | - |
| 2 | Sobic.006G208100 | maintain optimal Na+/K+ (PubmedID : 24325391)@Up-reguralion under drought(PubMedID : 24916767)@OsHKT1@4 - Na+ transporter, expressed | - |
| 3 | Sobic.009G167000 | expressed protein | - |
| 4 | Sobic.003G082000 | Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@hsp20/alpha crystallin family protein, putative, expressed | K13993: HSP20 family protein |
| 5 | Sobic.002G188700 | armadillo/beta-catenin repeat family protein, putative, expressed | - |
| 6 | Sobic.003G363200 | ZOS1-17 - C2H2 zinc finger protein, expressed | - |
| 7 | Sobic.003G268900 | STE_MEKK_ste11_MAP3K.6 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed | - |
| 8 | Sobic.001G028000 | expressed protein | - |
| 9 | Sobic.002G012800 | oxidoreductase, aldo/keto reductase family protein, putative, expressed | - |
| 10 | Sobic.003G039400 | similar to 17.8 kDa class II heat shock protein(PubMedID : 24655390)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@similar to 17.8 kDa class II heat shock protein(PubMedID : 24655390)@similar to 17.8 kDa class II heat shock protein(PubMedID : 24655390)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@hsp20/alpha crystallin family protein, putative, expressed | K13993: HSP20 family protein |
| 11 | Sobic.001G035000 | ZOS3-22 - C2H2 zinc finger protein, expressed | - |
| 12 | Sobic.004G232201 | - | - |
| 13 | Sobic.004G268700 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed | K09843: (+)-abscisic acid 8'-hydroxylase |
| 14 | Sobic.002G207100 | - | - |
| 15 | Sobic.008G058900 | amino acid transporter, putative, expressed | - |
| 16 | Sobic.004G244100 | glycosyl transferase 8 domain containing protein, putative, expressed | - |
| 17 | Sobic.010G201200 | expressed protein | - |
| 18 | Sobic.004G042600 | protein kinase domain containing protein, expressed | - |
| 19 | Sobic.006G274300 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@harpin-induced protein 1 domain containing protein, expressed | - |
| 20 | Sobic.005G158000 | cytochrome P450 71E1, putative, expressed | K13029: 4-hydroxyphenylacetaldehyde oxime monooxygenase |
Gene co-expression network
Octagon: transcription factors
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