Gene annotation
| Transcriptome id | Sobic.002G219200.1 |
|---|---|
| Synonym | Sb02g026070 |
| Functional annotation | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543) Up-reguralion under heat (PubMedID : 24916767) Up-reguralion under combine stress of drought and heat (PubMedID : 24916767) plant viral response family protein, putative, expressed |
| UniProt | C5XDT1 |
| Pfam | PF04819 |
| Panther DB | PTHR16007 PTHR16007:SF29 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT1G55230 : Family of unknown function (DUF716) |
|---|---|
| RAP-DB (Rice) | LOC_Os09g27260.1 : plant viral response family protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a047192 |
| Brachypodium | PNT64693 |
| Barley | HORVU5Hr1G066720.2 , HORVU5Hr1G066720.1 |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.009G057400 | cytochrome c oxidase-related, putative, expressed | K02266: cytochrome c oxidase subunit 6a |
| 2 | Sobic.003G363200 | ZOS1-17 - C2H2 zinc finger protein, expressed | - |
| 3 | Sobic.010G200700 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein | - |
| 4 | Sobic.001G035000 | ZOS3-22 - C2H2 zinc finger protein, expressed | - |
| 5 | Sobic.004G042600 | protein kinase domain containing protein, expressed | - |
| 6 | Sobic.006G267000 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@harpin-induced protein 1 domain containing protein, expressed | - |
| 7 | Sobic.006G274300 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@harpin-induced protein 1 domain containing protein, expressed | - |
| 8 | Sobic.003G082000 | Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@hsp20/alpha crystallin family protein, putative, expressed | K13993: HSP20 family protein |
| 9 | Sobic.010G245800 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@peroxidase precursor, putative, expressed | K00430: peroxidase |
| 10 | Sobic.004G297200 | DUF630/DUF632 domains containing protein, putative, expressed | - |
| 11 | Sobic.006G228300 | ethylene-responsive protein related, putative, expressed | - |
| 12 | Sobic.005G139700 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@respiratory burst oxidase, putative, expressed | K13447: respiratory burst oxidase |
| 13 | Sobic.004G283500 | MATE domain containing protein, expressed | K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family |
| 14 | Sobic.003G012800 | AP2 domain containing protein, expressed | - |
| 15 | Sobic.002G131800 | copine, putative, expressed | K16280: E3 ubiquitin-protein ligase RGLG |
| 16 | Sobic.006G148000 | MYB family transcription factor, putative, expressed | K09422: transcription factor MYB, plant |
| 17 | Sobic.001G209800 | harpin-induced protein 1 domain containing protein, expressed | - |
| 18 | Sobic.010G175200 | low-affinity cation transporter, putative, expressed | - |
| 19 | Sobic.001G441100 | immediate-early fungal elicitor protein CMPG1, putative, expressed | - |
| 20 | Sobic.001G077400 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed | K01723: hydroperoxide dehydratase |
Gene co-expression network
Octagon: transcription factors
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