Gene annotation
| Transcriptome id | Sobic.006G267000.1 |
|---|---|
| Synonym | Sb06g032920 |
| Functional annotation | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543) harpin-induced protein 1 domain containing protein, expressed |
| UniProt | C5YAI6 |
| Pfam | PF03168 |
| Panther DB | PTHR31852 PTHR31852:SF20 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT5G36970 : NDR1/HIN1-like 25 |
|---|---|
| RAP-DB (Rice) | LOC_Os04g58090.1 : harpin-induced protein 1 domain containing protein, expressed |
| MaizeGDB (Corn) | Zm00025a009296 |
| Brachypodium | KQJ85285 |
| Barley | HORVU2Hr1G119500.1 |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.003G387200 | - | - |
| 2 | Sobic.001G441100 | immediate-early fungal elicitor protein CMPG1, putative, expressed | - |
| 3 | Sobic.001G035000 | ZOS3-22 - C2H2 zinc finger protein, expressed | - |
| 4 | Sobic.006G148000 | MYB family transcription factor, putative, expressed | K09422: transcription factor MYB, plant |
| 5 | Sobic.004G283500 | MATE domain containing protein, expressed | K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family |
| 6 | Sobic.002G278500 | nodulin, putative, expressed | - |
| 7 | Sobic.001G495132 | - | - |
| 8 | Sobic.001G341600 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@tyrosine protein kinase domain containing protein, putative, expressed | - |
| 9 | Sobic.009G217600 | STE_MEKK_ste11_MAP3K.19 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed | - |
| 10 | Sobic.007G057700 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- | - |
| 11 | Sobic.003G323700 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsSub6 - Putative Subtilisin homologue, expressed | - |
| 12 | Sobic.001G338600 | "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by IAA and BR treatments"(PubMedID : 20499123)@SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@DUF260 domain containing protein, putative, expressed | - |
| 13 | Sobic.001G426000 | Up-reguralion under heat(PubMedID : 24916767)@hsp20/alpha crystallin family protein, putative, expressed | K13993: HSP20 family protein |
| 14 | Sobic.001G329800 | allene oxide cyclase 4, chloroplast precursor, putative, expressed | K10525: allene oxide cyclase |
| 15 | Sobic.001G035100 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@ZOS3-21 - C2H2 zinc finger protein, expressed | - |
| 16 | Sobic.001G440200 | senescence-associated protein, putative, expressed | - |
| 17 | Sobic.004G228900 | Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@heat shock 22 kDa protein, mitochondrial precursor, putative, expressed | K13993: HSP20 family protein |
| 18 | Sobic.002G131800 | copine, putative, expressed | K16280: E3 ubiquitin-protein ligase RGLG |
| 19 | Sobic.006G165100 | Trihelix Family(PubMedID : 24864043)@transcription factor like protein, putative, expressed | - |
| 20 | Sobic.007G122500 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein | - |
Gene co-expression network
Octagon: transcription factors
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