Gene annotation
Transcriptome id Sobic.001G329800.1
Synonym Sb01g031870, AOC3
Functional annotation allene oxide cyclase 4, chloroplast precursor, putative, expressed
UniProt C5WVL6
Pfam PF06351
Panther DB PTHR31843 PTHR31843:SF1
NCBI CDD -
KEGG Orthology K10525; allene oxide cyclase
Gene Ontology GO:0016853; isomerase activity GO:0009507chloroplast


Orthologs (automatic annotation)
TAIR AT3G25780 : allene oxide cyclase 3
RAP-DB (Rice) LOC_Os03g32314.1 : allene oxide cyclase 4, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a002984 , Zm00025a052226
Brachypodium KQK14380
Barley HORVU6Hr1G081000.3 , HORVU6Hr1G081000.2 , HORVU6Hr1G081000.1
Wheat TraesCS6A02G334800 , TraesCS6B02G365200 , TraesCS6D02G314300
Populus -


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cDNA sequences
Sobic.001G329800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G155200 bifunctional monodehydroascorbate reductase and carbonic anhydrasenectarin-3 precursor, putative, expressed K01674: carbonic anhydrase
2 Sobic.004G228500 plastocyanin-like domain containing protein, putative, expressed -
3 Sobic.003G323700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsSub6 - Putative Subtilisin homologue, expressed -
4 Sobic.009G036000 similar to Hydrophobic protein LTI6B(PubMedID : 29862293)@OsRCI2-6 - Hydrophobic protein LTI6B, expressed -
5 Sobic.009G036100 similar to Hydrophobic protein LTI6B(PubMedID : 29862293)@OsRCI2-6 - Hydrophobic protein LTI6B, expressed -
6 Sobic.006G066200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@prephenate dehydratase domain containing protein, expressed K05359: ADT, arogenate/prephenate dehydratase
7 Sobic.001G015100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pirin, putative, expressed K06911: quercetin 2,3-dioxygenase
8 Sobic.001G330100 ZOS3-12 - C2H2 zinc finger protein, expressed -
9 Sobic.010G223600 ubiquitin family protein, putative, expressed K08770: ubiquitin C
10 Sobic.010G238600 transferase family protein, putative, expressed -
11 Sobic.002G140400 plastocyanin-like domain containing protein, putative, expressed -
12 Sobic.003G349600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ZOS1-14 - C2H2 zinc finger protein, expressed -
13 Sobic.005G045900 - -
14 Sobic.006G267000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@harpin-induced protein 1 domain containing protein, expressed -
15 Sobic.003G430400 OsCML31 - Calmodulin-related calcium sensor protein, expressed K13448: calcium-binding protein CML
16 Sobic.004G037000 tRNA synthetases class II domain containing protein, expressed K01876: aspartyl-tRNA synthetase
17 Sobic.001G449700 highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@cytochrome P450, putative, expressed K01723: hydroperoxide dehydratase
18 Sobic.002G395300 gibberellin receptor GID1L2, putative, expressed -
19 Sobic.001G330200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ZOS3-12 - C2H2 zinc finger protein, expressed -
20 Sobic.009G224100 UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -


Gene co-expression network
sample Sobic001G329800 Sobic001G329800 Sobic007G155200 Sobic007G155200 Sobic001G329800--Sobic007G155200 Sobic004G228500 Sobic004G228500 Sobic001G329800--Sobic004G228500 Sobic003G323700 Sobic003G323700 Sobic001G329800--Sobic003G323700 Sobic009G036000 Sobic009G036000 Sobic001G329800--Sobic009G036000 Sobic009G036100 Sobic009G036100 Sobic001G329800--Sobic009G036100 Sobic006G066200 Sobic006G066200 Sobic001G329800--Sobic006G066200 Sobic001G015100 Sobic001G015100 Sobic001G329800--Sobic001G015100 Sobic001G330100 Sobic001G330100 Sobic001G329800--Sobic001G330100 Sobic010G223600 Sobic010G223600 Sobic001G329800--Sobic010G223600 Sobic009G224100 Sobic009G224100 Sobic007G155200--Sobic009G224100 Sobic002G184200 Sobic002G184200 Sobic007G155200--Sobic002G184200 Sobic005G045900 Sobic005G045900 Sobic007G155200--Sobic005G045900 Sobic002G140400 Sobic002G140400 Sobic007G155200--Sobic002G140400 Sobic004G037000 Sobic004G037000 Sobic007G155200--Sobic004G037000 Sobic010G196600 Sobic010G196600 Sobic007G155200--Sobic010G196600 Sobic007G155200--Sobic004G228500 Sobic003G349600 Sobic003G349600 Sobic007G155200--Sobic003G349600 Sobic002G139400 Sobic002G139400 Sobic007G155200--Sobic002G139400 Sobic009G144700 Sobic009G144700 Sobic004G228500--Sobic009G144700 Sobic004G108200 Sobic004G108200 Sobic004G228500--Sobic004G108200 Sobic004G352000 Sobic004G352000 Sobic004G228500--Sobic004G352000 Sobic004G228500--Sobic001G330100 Sobic001G471200 Sobic001G471200 Sobic004G228500--Sobic001G471200 Sobic004G228500--Sobic007G155200 Sobic009G183900 Sobic009G183900 Sobic004G228500--Sobic009G183900 Sobic003G148300 Sobic003G148300 Sobic004G228500--Sobic003G148300 Sobic002G388900 Sobic002G388900 Sobic004G228500--Sobic002G388900 Sobic002G140300 Sobic002G140300 Sobic003G323700--Sobic002G140300 Sobic003G323700--Sobic009G036100 Sobic003G387200 Sobic003G387200 Sobic003G323700--Sobic003G387200 Sobic004G222500 Sobic004G222500 Sobic003G323700--Sobic004G222500 Sobic003G323700--Sobic001G329800 Sobic003G323700--Sobic006G066200 Sobic001G441100 Sobic001G441100 Sobic003G323700--Sobic001G441100 Sobic003G430400 Sobic003G430400 Sobic003G323700--Sobic003G430400 Sobic002G220000 Sobic002G220000 Sobic003G323700--Sobic002G220000 Sobic001G320900 Sobic001G320900 Sobic009G036000--Sobic001G320900 Sobic009G036000--Sobic009G036100 Sobic009G247900 Sobic009G247900 Sobic009G036000--Sobic009G247900 Sobic001G383700 Sobic001G383700 Sobic009G036000--Sobic001G383700 Sobic003G364600 Sobic003G364600 Sobic009G036000--Sobic003G364600 Sobic007G074000 Sobic007G074000 Sobic009G036000--Sobic007G074000 Sobic001G308300 Sobic001G308300 Sobic009G036000--Sobic001G308300 Sobic001G391500 Sobic001G391500 Sobic009G036000--Sobic001G391500 Sobic004G169200 Sobic004G169200 Sobic009G036000--Sobic004G169200 Sobic009G036100--Sobic009G036000 Sobic009G036100--Sobic007G074000 Sobic009G036100--Sobic001G320900 Sobic001G407800 Sobic001G407800 Sobic009G036100--Sobic001G407800 Sobic009G036100--Sobic009G247900 Sobic009G036100--Sobic002G140300 Sobic003G369100 Sobic003G369100 Sobic009G036100--Sobic003G369100 Sobic003G324400 Sobic003G324400 Sobic009G036100--Sobic003G324400 Sobic001G258300 Sobic001G258300 Sobic009G036100--Sobic001G258300 Sobic006G066200--Sobic003G430400 Sobic006G066200--Sobic002G140300 Sobic006G066200--Sobic004G222500 Sobic006G066200--Sobic009G247900 Sobic004G341800 Sobic004G341800 Sobic006G066200--Sobic004G341800 Sobic001G040200 Sobic001G040200 Sobic006G066200--Sobic001G040200 Sobic003G092900 Sobic003G092900 Sobic006G066200--Sobic003G092900 Sobic002G131800 Sobic002G131800 Sobic006G066200--Sobic002G131800 Sobic006G179500 Sobic006G179500 Sobic006G066200--Sobic006G179500 Sobic001G015100--Sobic002G140400 Sobic004G187900 Sobic004G187900 Sobic001G015100--Sobic004G187900 Sobic001G015100--Sobic003G430400 Sobic001G015100--Sobic007G155200 Sobic001G124600 Sobic001G124600 Sobic001G015100--Sobic001G124600 Sobic001G423800 Sobic001G423800 Sobic001G015100--Sobic001G423800 Sobic010G238600 Sobic010G238600 Sobic001G015100--Sobic010G238600 Sobic001G038900 Sobic001G038900 Sobic001G015100--Sobic001G038900 Sobic002G211900 Sobic002G211900 Sobic001G015100--Sobic002G211900 Sobic001G330200 Sobic001G330200 Sobic001G330100--Sobic001G330200 Sobic001G330100--Sobic009G144700 Sobic001G330100--Sobic002G388900 Sobic001G256700 Sobic001G256700 Sobic001G330100--Sobic001G256700 Sobic004G219800 Sobic004G219800 Sobic001G330100--Sobic004G219800 Sobic002G395300 Sobic002G395300 Sobic001G330100--Sobic002G395300 Sobic001G330100--Sobic004G108200 Sobic001G330100--Sobic004G352000 Sobic004G294400 Sobic004G294400 Sobic001G330100--Sobic004G294400 Sobic003G393900 Sobic003G393900 Sobic010G223600--Sobic003G393900 Sobic010G223600--Sobic009G036000 Sobic010G223600--Sobic009G247900 Sobic002G339000 Sobic002G339000 Sobic010G223600--Sobic002G339000 Sobic009G122400 Sobic009G122400 Sobic010G223600--Sobic009G122400 Sobic010G223600--Sobic004G169200 Sobic010G223600--Sobic001G471200 Sobic010G223600--Sobic009G224100 Sobic001G035100 Sobic001G035100 Sobic010G223600--Sobic001G035100
Octagon: transcription factors


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