Gene annotation
Transcriptome id Sobic.004G037000.1
Synonym
Functional annotation tRNA synthetases class II domain containing protein, expressed
UniProt A0A1Z5RKZ5
Pfam PF00152
Panther DB PTHR22594 PTHR22594:SF32
NCBI CDD -
KEGG Orthology K01876; aspartyl-tRNA synthetase
Gene Ontology GO:0006418; tRNA aminoacylation for protein translation GO:0005524ATP binding GO:0004812aminoacyl-tRNA ligase activity GO:0000166nucleotide binding


Orthologs (automatic annotation)
TAIR AT4G31180 : Class II aminoacyl-tRNA and biotin synthetases superfamily protein
RAP-DB (Rice) LOC_Os02g04700.1 : tRNA synthetases class II domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G155200 bifunctional monodehydroascorbate reductase and carbonic anhydrasenectarin-3 precursor, putative, expressed K01674: carbonic anhydrase
2 Sobic.002G361100 similar to Glutathione transferase(PubMedID : 29862293)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
3 Sobic.010G084600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@12-oxophytodienoate reductase, putative, expressed K05894: 12-oxophytodienoic acid reductase
4 Sobic.002G184200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@heat shock protein DnaJ, putative, expressed -
5 Sobic.010G084700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@12-oxophytodienoate reductase, putative, expressed K05894: 12-oxophytodienoic acid reductase
6 Sobic.009G224100 UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
7 Sobic.004G221500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein K13113: UBL5, ubiquitin-like protein 5
8 Sobic.006G207000 expressed protein -
9 Sobic.010G196600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.001G231600 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K00059: fabG, 3-oxoacyl-[acyl-carrier protein] reductase
11 Sobic.002G183100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
12 Sobic.004G115500 expressed protein -
13 Sobic.002G139400 AP2 domain containing protein, expressed -
14 Sobic.004G228500 plastocyanin-like domain containing protein, putative, expressed -
15 Sobic.001G319600 Relative abundance under control condition and upregulated in cold susceptible sorghum under cold stress(PubMedID : 26645959)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
16 Sobic.001G495180 - -
17 Sobic.001G487300 expressed protein -
18 Sobic.004G341000 OsFBX66 - F-box domain containing protein, expressed -
19 Sobic.006G107200 molybdopterin biosynthesis protein CNX3, putative, expressed K03639: moaA, GTP 3',8-cyclase
20 Sobic.007G176600 expressed protein -


Gene co-expression network
sample Sobic004G037000 Sobic004G037000 Sobic007G155200 Sobic007G155200 Sobic004G037000--Sobic007G155200 Sobic002G361100 Sobic002G361100 Sobic004G037000--Sobic002G361100 Sobic010G084600 Sobic010G084600 Sobic004G037000--Sobic010G084600 Sobic002G184200 Sobic002G184200 Sobic004G037000--Sobic002G184200 Sobic010G084700 Sobic010G084700 Sobic004G037000--Sobic010G084700 Sobic009G224100 Sobic009G224100 Sobic004G037000--Sobic009G224100 Sobic004G221500 Sobic004G221500 Sobic004G037000--Sobic004G221500 Sobic006G207000 Sobic006G207000 Sobic004G037000--Sobic006G207000 Sobic010G196600 Sobic010G196600 Sobic004G037000--Sobic010G196600 Sobic007G155200--Sobic009G224100 Sobic007G155200--Sobic002G184200 Sobic005G045900 Sobic005G045900 Sobic007G155200--Sobic005G045900 Sobic002G140400 Sobic002G140400 Sobic007G155200--Sobic002G140400 Sobic007G155200--Sobic004G037000 Sobic007G155200--Sobic010G196600 Sobic004G228500 Sobic004G228500 Sobic007G155200--Sobic004G228500 Sobic003G349600 Sobic003G349600 Sobic007G155200--Sobic003G349600 Sobic002G139400 Sobic002G139400 Sobic007G155200--Sobic002G139400 Sobic009G061200 Sobic009G061200 Sobic002G361100--Sobic009G061200 Sobic001G319600 Sobic001G319600 Sobic002G361100--Sobic001G319600 Sobic001G387900 Sobic001G387900 Sobic002G361100--Sobic001G387900 Sobic003G078100 Sobic003G078100 Sobic002G361100--Sobic003G078100 Sobic002G361100--Sobic009G224100 Sobic002G361100--Sobic004G037000 Sobic002G361100--Sobic010G084600 Sobic001G108200 Sobic001G108200 Sobic002G361100--Sobic001G108200 Sobic004G216600 Sobic004G216600 Sobic002G361100--Sobic004G216600 Sobic010G084600--Sobic002G184200 Sobic003G307300 Sobic003G307300 Sobic010G084600--Sobic003G307300 Sobic006G084600 Sobic006G084600 Sobic010G084600--Sobic006G084600 Sobic010G084600--Sobic004G221500 Sobic010G084600--Sobic004G037000 Sobic010G084600--Sobic007G155200 Sobic010G084600--Sobic002G361100 Sobic010G084600--Sobic009G224100 Sobic001G365100 Sobic001G365100 Sobic010G084600--Sobic001G365100 Sobic002G184200--Sobic009G224100 Sobic002G184200--Sobic002G139400 Sobic004G243100 Sobic004G243100 Sobic002G184200--Sobic004G243100 Sobic002G184200--Sobic004G221500 Sobic007G067400 Sobic007G067400 Sobic002G184200--Sobic007G067400 Sobic002G184200--Sobic010G084700 Sobic002G184200--Sobic007G155200 Sobic007G155100 Sobic007G155100 Sobic002G184200--Sobic007G155100 Sobic001G423800 Sobic001G423800 Sobic002G184200--Sobic001G423800 Sobic010G084700--Sobic004G221500 Sobic010G084100 Sobic010G084100 Sobic010G084700--Sobic010G084100 Sobic010G117900 Sobic010G117900 Sobic010G084700--Sobic010G117900 Sobic010G084700--Sobic002G184200 Sobic010G176600 Sobic010G176600 Sobic010G084700--Sobic010G176600 Sobic003G286600 Sobic003G286600 Sobic010G084700--Sobic003G286600 Sobic001G348700 Sobic001G348700 Sobic010G084700--Sobic001G348700 Sobic010G084700--Sobic001G423800 Sobic001G192200 Sobic001G192200 Sobic010G084700--Sobic001G192200 Sobic009G224100--Sobic004G243100 Sobic009G224100--Sobic002G139400 Sobic009G224100--Sobic002G184200 Sobic008G187001 Sobic008G187001 Sobic009G224100--Sobic008G187001 Sobic009G224100--Sobic007G155200 Sobic009G224100--Sobic001G423800 Sobic002G388900 Sobic002G388900 Sobic009G224100--Sobic002G388900 Sobic009G224100--Sobic001G192200 Sobic001G330100 Sobic001G330100 Sobic009G224100--Sobic001G330100 Sobic004G221500--Sobic010G084700 Sobic004G221500--Sobic006G084600 Sobic004G221500--Sobic001G348700 Sobic004G221500--Sobic002G184200 Sobic004G221500--Sobic001G423800 Sobic004G221500--Sobic010G084100 Sobic003G252800 Sobic003G252800 Sobic004G221500--Sobic003G252800 Sobic004G221500--Sobic003G286600 Sobic004G221500--Sobic010G117900 Sobic003G116800 Sobic003G116800 Sobic006G207000--Sobic003G116800 Sobic004G086400 Sobic004G086400 Sobic006G207000--Sobic004G086400 Sobic006G207100 Sobic006G207100 Sobic006G207000--Sobic006G207100 Sobic006G207000--Sobic010G196600 Sobic002G339000 Sobic002G339000 Sobic006G207000--Sobic002G339000 Sobic003G148300 Sobic003G148300 Sobic006G207000--Sobic003G148300 Sobic001G425500 Sobic001G425500 Sobic006G207000--Sobic001G425500 Sobic006G207000--Sobic007G155200 Sobic004G004500 Sobic004G004500 Sobic006G207000--Sobic004G004500 Sobic009G194400 Sobic009G194400 Sobic010G196600--Sobic009G194400 Sobic010G196600--Sobic001G425500 Sobic004G109700 Sobic004G109700 Sobic010G196600--Sobic004G109700 Sobic004G283500 Sobic004G283500 Sobic010G196600--Sobic004G283500 Sobic010G196600--Sobic002G388900 Sobic003G323201 Sobic003G323201 Sobic010G196600--Sobic003G323201 Sobic010G196600--Sobic008G187001 Sobic001G425600 Sobic001G425600 Sobic010G196600--Sobic001G425600 Sobic004G109600 Sobic004G109600 Sobic010G196600--Sobic004G109600
Octagon: transcription factors


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