Gene annotation
Transcriptome id Sobic.004G115500.1
Synonym Sb04g009600
Functional annotation expressed protein
UniProt C5XZH2
Pfam -
Panther DB PTHR33978 PTHR33978:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os02g15800.1 : expressed protein
MaizeGDB (Corn) Zm00025a019916
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G357100 ZOS9-11 - C2H2 zinc finger protein, expressed -
2 Sobic.007G169500 expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@Ribosomal protein L1p/L10e family("PubMedID : 26759170,PubMedID : 24597475")@L1P family of ribosomal proteins domain containing protein, expressed K02865: RP-L10Ae, large subunit ribosomal protein L10Ae
3 Sobic.008G054150 - -
4 Sobic.009G009400 expressed protein -
5 Sobic.001G343601 - K07748: NSDHL, sterol-4alpha-carboxylate 3-dehydrogenase (decarboxylating)
6 Sobic.009G043700 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
7 Sobic.010G084600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@12-oxophytodienoate reductase, putative, expressed K05894: 12-oxophytodienoic acid reductase
8 Sobic.004G341000 OsFBX66 - F-box domain containing protein, expressed -
9 Sobic.004G037000 tRNA synthetases class II domain containing protein, expressed K01876: aspartyl-tRNA synthetase
10 Sobic.001G260000 SAP domain containing protein, expressed -
11 Sobic.010G179400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed K08237: hydroquinone glucosyltransferase
12 Sobic.010G196600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.001G279701 - -
14 Sobic.007G155200 bifunctional monodehydroascorbate reductase and carbonic anhydrasenectarin-3 precursor, putative, expressed K01674: carbonic anhydrase
15 Sobic.006G057500 flavonol sulfotransferase, putative, expressed -
16 Sobic.001G495180 - -
17 Sobic.009G224100 UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
18 Sobic.002G184200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@heat shock protein DnaJ, putative, expressed -
19 Sobic.007G158700 expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@phospholipase A("PubMedID : 26759170,PubMedID : 24597475")@patatin, putative, expressed -
20 Sobic.002G100832 - -


Gene co-expression network
sample Sobic004G115500 Sobic004G115500 Sobic001G357100 Sobic001G357100 Sobic004G115500--Sobic001G357100 Sobic007G169500 Sobic007G169500 Sobic004G115500--Sobic007G169500 Sobic008G054150 Sobic008G054150 Sobic004G115500--Sobic008G054150 Sobic009G009400 Sobic009G009400 Sobic004G115500--Sobic009G009400 Sobic001G343601 Sobic001G343601 Sobic004G115500--Sobic001G343601 Sobic009G043700 Sobic009G043700 Sobic004G115500--Sobic009G043700 Sobic010G084600 Sobic010G084600 Sobic004G115500--Sobic010G084600 Sobic004G341000 Sobic004G341000 Sobic004G115500--Sobic004G341000 Sobic004G037000 Sobic004G037000 Sobic004G115500--Sobic004G037000 Sobic001G357100--Sobic004G115500 Sobic003G307300 Sobic003G307300 Sobic001G357100--Sobic003G307300 Sobic001G357100--Sobic007G169500 Sobic001G357100--Sobic001G343601 Sobic001G357100--Sobic009G009400 Sobic001G279701 Sobic001G279701 Sobic001G357100--Sobic001G279701 Sobic007G155200 Sobic007G155200 Sobic001G357100--Sobic007G155200 Sobic001G357100--Sobic008G054150 Sobic001G357100--Sobic010G084600 Sobic007G169500--Sobic008G054150 Sobic007G169500--Sobic009G009400 Sobic007G169500--Sobic001G343601 Sobic007G169500--Sobic004G115500 Sobic001G260000 Sobic001G260000 Sobic007G169500--Sobic001G260000 Sobic007G169500--Sobic001G357100 Sobic006G057500 Sobic006G057500 Sobic007G169500--Sobic006G057500 Sobic007G169500--Sobic009G043700 Sobic002G146100 Sobic002G146100 Sobic007G169500--Sobic002G146100 Sobic008G054150--Sobic007G169500 Sobic008G054150--Sobic001G260000 Sobic008G054150--Sobic001G343601 Sobic008G054150--Sobic009G009400 Sobic008G054150--Sobic004G115500 Sobic008G054150--Sobic002G146100 Sobic008G054150--Sobic006G057500 Sobic008G054150--Sobic004G341000 Sobic004G311750 Sobic004G311750 Sobic008G054150--Sobic004G311750 Sobic009G009400--Sobic001G343601 Sobic009G009400--Sobic007G169500 Sobic009G009400--Sobic008G054150 Sobic001G342700 Sobic001G342700 Sobic009G009400--Sobic001G342700 Sobic009G009400--Sobic009G043700 Sobic009G009400--Sobic004G115500 Sobic009G009400--Sobic001G260000 Sobic009G009400--Sobic002G146100 Sobic002G182500 Sobic002G182500 Sobic009G009400--Sobic002G182500 Sobic001G343601--Sobic009G009400 Sobic001G343601--Sobic008G054150 Sobic001G343601--Sobic001G342700 Sobic001G343601--Sobic001G260000 Sobic001G343601--Sobic007G169500 Sobic001G343601--Sobic002G146100 Sobic001G343601--Sobic004G115500 Sobic006G033260 Sobic006G033260 Sobic001G343601--Sobic006G033260 Sobic007G158700 Sobic007G158700 Sobic001G343601--Sobic007G158700 Sobic009G043700--Sobic009G009400 Sobic009G043700--Sobic004G115500 Sobic009G043700--Sobic007G169500 Sobic009G043700--Sobic001G343601 Sobic009G043700--Sobic008G054150 Sobic009G043700--Sobic001G357100 Sobic009G043700--Sobic001G342700 Sobic001G495148 Sobic001G495148 Sobic009G043700--Sobic001G495148 Sobic008G068166 Sobic008G068166 Sobic009G043700--Sobic008G068166 Sobic002G184200 Sobic002G184200 Sobic010G084600--Sobic002G184200 Sobic010G084600--Sobic003G307300 Sobic006G084600 Sobic006G084600 Sobic010G084600--Sobic006G084600 Sobic004G221500 Sobic004G221500 Sobic010G084600--Sobic004G221500 Sobic010G084600--Sobic004G037000 Sobic010G084600--Sobic007G155200 Sobic002G361100 Sobic002G361100 Sobic010G084600--Sobic002G361100 Sobic009G224100 Sobic009G224100 Sobic010G084600--Sobic009G224100 Sobic001G365100 Sobic001G365100 Sobic010G084600--Sobic001G365100 Sobic004G341000--Sobic006G057500 Sobic002G100832 Sobic002G100832 Sobic004G341000--Sobic002G100832 Sobic001G065900 Sobic001G065900 Sobic004G341000--Sobic001G065900 Sobic009G194400 Sobic009G194400 Sobic004G341000--Sobic009G194400 Sobic003G060100 Sobic003G060100 Sobic004G341000--Sobic003G060100 Sobic010G196600 Sobic010G196600 Sobic004G341000--Sobic010G196600 Sobic004G165800 Sobic004G165800 Sobic004G341000--Sobic004G165800 Sobic001G425500 Sobic001G425500 Sobic004G341000--Sobic001G425500 Sobic004G341000--Sobic008G054150 Sobic004G037000--Sobic007G155200 Sobic004G037000--Sobic002G361100 Sobic004G037000--Sobic010G084600 Sobic004G037000--Sobic002G184200 Sobic010G084700 Sobic010G084700 Sobic004G037000--Sobic010G084700 Sobic004G037000--Sobic009G224100 Sobic004G037000--Sobic004G221500 Sobic006G207000 Sobic006G207000 Sobic004G037000--Sobic006G207000 Sobic004G037000--Sobic010G196600
Octagon: transcription factors


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