Gene annotation
| Transcriptome id | Sobic.007G158700.1 |
|---|---|
| Synonym | PLA2A, PLAIIA, Sb07g023220, PLP2 |
| Functional annotation | expressed high in San Chi San (an efficient nitrogen user) (PubMedID : 28697783) phospholipase A( (PubMedID : 26759170,(PubMedID : 24597475) patatin, putative, expressed |
| UniProt | A0A1Z5RA43 |
| Pfam | PF01734 |
| Panther DB | PTHR32176 PTHR32176:SF7 |
| NCBI CDD | KOG0513; Ca2+-independent phospholipase A2 |
| KEGG Orthology | - |
| Gene Ontology | GO:0006629; lipid metabolic process |
Orthologs (automatic annotation)
| TAIR | AT2G26560 : phospholipase A 2A |
|---|---|
| RAP-DB (Rice) | LOC_Os08g37210.1 : patatin, putative, expressed |
| MaizeGDB (Corn) | Zm00025a005448 , Zm00025a005447 , Zm00025a005450 , Zm00025a005449 |
| Brachypodium | - |
| Barley | HORVU2Hr1G037280.1 , HORVU2Hr1G037280.3 , HORVU2Hr1G037280.2 , HORVU5Hr1G119820.4 , HORVU5Hr1G119820.2 , HORVU5Hr1G119820.3 , HORVU5Hr1G119820.1 |
| Wheat | TraesCS5D02G528100 , TraesCS5D02G528100 , TraesCS1A02G407800 , TraesCS1A02G407800 , TraesCS1A02G407800 , TraesCS5B02G529100 , TraesCS5B02G529100 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G343601 | - | K07748: NSDHL, sterol-4alpha-carboxylate 3-dehydrogenase (decarboxylating) |
| 2 | Sobic.009G009400 | expressed protein | - |
| 3 | Sobic.008G054150 | - | - |
| 4 | Sobic.001G342700 | protein phosphotase protein, putative, expressed | - |
| 5 | Sobic.001G260000 | SAP domain containing protein, expressed | - |
| 6 | Sobic.002G182500 | nucleic acid binding protein, putative, expressed | - |
| 7 | Sobic.004G115500 | expressed protein | - |
| 8 | Sobic.007G169500 | expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@Ribosomal protein L1p/L10e family("PubMedID : 26759170,PubMedID : 24597475")@L1P family of ribosomal proteins domain containing protein, expressed | K02865: RP-L10Ae, large subunit ribosomal protein L10Ae |
| 9 | Sobic.002G379100 | dehydrogenase, putative, expressed | - |
| 10 | Sobic.001G231600 | oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed | K00059: fabG, 3-oxoacyl-[acyl-carrier protein] reductase |
| 11 | Sobic.002G146100 | - | - |
| 12 | Sobic.001G357100 | ZOS9-11 - C2H2 zinc finger protein, expressed | - |
| 13 | Sobic.004G037000 | tRNA synthetases class II domain containing protein, expressed | K01876: aspartyl-tRNA synthetase |
| 14 | Sobic.010G084600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@12-oxophytodienoate reductase, putative, expressed | K05894: 12-oxophytodienoic acid reductase |
| 15 | Sobic.004G128400 | O-methyltransferase, putative, expressed | - |
| 16 | Sobic.009G043700 | glutathione S-transferase, putative, expressed | K00799: GST, glutathione S-transferase |
| 17 | Sobic.007G067350 | - | - |
| 18 | Sobic.010G179400 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed | K08237: hydroquinone glucosyltransferase |
| 19 | Sobic.002G183100 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein | - |
| 20 | Sobic.001G343500 | sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating, putative, expressed | K07748: NSDHL, sterol-4alpha-carboxylate 3-dehydrogenase (decarboxylating) |
Gene co-expression network
Octagon: transcription factors
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