Gene annotation
Transcriptome id Sobic.002G379100.1
Synonym Sb02g039600
Functional annotation dehydrogenase, putative, expressed
UniProt A0A1B6QFP0
Pfam PF00107 PF08240
Panther DB PTHR11695 PTHR11695:SF494
NCBI CDD KOG0022; Alcohol dehydrogenase, class III
KEGG Orthology -
Gene Ontology GO:0016491; oxidoreductase activity GO:0008270zinc ion binding


Orthologs (automatic annotation)
TAIR AT1G22440 : Zinc-binding alcohol dehydrogenase family protein
RAP-DB (Rice) LOC_Os07g42924.1 : dehydrogenase, putative, expressed
MaizeGDB (Corn) Zm00025a003824
Brachypodium KQK15214 , KQK15215 , PNT74742 , KQJ96074 , PNT74741 , KQK15213
Barley HORVU2Hr1G029960.17 , HORVU2Hr1G029960.14 , HORVU2Hr1G029960.15 , HORVU2Hr1G029960.16 , HORVU2Hr1G029960.10 , HORVU2Hr1G029960.11 , HORVU2Hr1G029960.12 , HORVU2Hr1G029960.13 , HORVU5Hr1G057090.1 , HORVU5Hr1G057090.2 , HORVU5Hr1G057090.3 , HORVU5Hr1G057090.4 , HORVU5Hr1G057090.5 , HORVU2Hr1G029960.6 , HORVU2Hr1G029960.7 , HORVU2Hr1G029960.4 , HORVU2Hr1G029960.5 , HORVU2Hr1G029960.2 , HORVU2Hr1G029960.3 , HORVU2Hr1G029960.1 , HORVU2Hr1G029960.8 , HORVU2Hr1G029960.9 , HORVU4Hr1G016810.8 , HORVU4Hr1G016810.9 , HORVU4Hr1G016810.2 , HORVU4Hr1G016810.3 , HORVU4Hr1G016810.1 , HORVU4Hr1G016810.6 , HORVU4Hr1G016810.7 , HORVU4Hr1G016810.4 , HORVU4Hr1G016810.5 , HORVU4Hr1G016810.10 , HORVU4Hr1G016810.12 , HORVU4Hr1G016810.14 , HORVU4Hr1G016810.15
Wheat TraesCS5B02G189200 , TraesCS4A02G202100 , TraesCS4A02G202100 , TraesCS2A02G163900 , TraesCS2A02G163900 , TraesCS2A02G163900 , TraesCS5A02G193900 , TraesCS2B02G189800 , TraesCS2D02G170900 , TraesCS2B02G189700 , TraesCS4B02G106300 , TraesCS4B02G106300 , TraesCS2D02G170800 , TraesCS5D02G196300 , TraesCS5D02G196300 , TraesCS4D02G103000 , TraesCS4D02G103000
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.002G379100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G158700 expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@phospholipase A("PubMedID : 26759170,PubMedID : 24597475")@patatin, putative, expressed -
2 Sobic.010G179400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed K08237: hydroquinone glucosyltransferase
3 Sobic.008G029400 expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@WRKY DNA-binding protein 55("PubMedID : 26759170,PubMedID : 24597475")@WRKY46, expressed -
4 Sobic.001G403000 expressed protein -
5 Sobic.001G487300 expressed protein -
6 Sobic.001G343500 sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating, putative, expressed K07748: NSDHL, sterol-4alpha-carboxylate 3-dehydrogenase (decarboxylating)
7 Sobic.002G210401 - -
8 Sobic.004G228500 plastocyanin-like domain containing protein, putative, expressed -
9 Sobic.002G099451 - -
10 Sobic.002G261300 expressed protein -
11 Sobic.007G176100 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
12 Sobic.008G063400 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
13 Sobic.009G240600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phospholipase, putative, expressed -
14 Sobic.001G343832 - -
15 Sobic.001G343601 - K07748: NSDHL, sterol-4alpha-carboxylate 3-dehydrogenase (decarboxylating)
16 Sobic.001G260000 SAP domain containing protein, expressed -
17 Sobic.006G105000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@aldose 1-epimerase, putative, expressed K01785: galM, aldose 1-epimerase
18 Sobic.007G030501 - -
19 Sobic.003G264400 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
20 Sobic.008G054150 - -


Gene co-expression network
sample Sobic002G379100 Sobic002G379100 Sobic007G158700 Sobic007G158700 Sobic002G379100--Sobic007G158700 Sobic010G179400 Sobic010G179400 Sobic002G379100--Sobic010G179400 Sobic008G029400 Sobic008G029400 Sobic002G379100--Sobic008G029400 Sobic001G403000 Sobic001G403000 Sobic002G379100--Sobic001G403000 Sobic001G487300 Sobic001G487300 Sobic002G379100--Sobic001G487300 Sobic001G343500 Sobic001G343500 Sobic002G379100--Sobic001G343500 Sobic002G210401 Sobic002G210401 Sobic002G379100--Sobic002G210401 Sobic004G228500 Sobic004G228500 Sobic002G379100--Sobic004G228500 Sobic002G099451 Sobic002G099451 Sobic002G379100--Sobic002G099451 Sobic001G343601 Sobic001G343601 Sobic007G158700--Sobic001G343601 Sobic009G009400 Sobic009G009400 Sobic007G158700--Sobic009G009400 Sobic008G054150 Sobic008G054150 Sobic007G158700--Sobic008G054150 Sobic001G342700 Sobic001G342700 Sobic007G158700--Sobic001G342700 Sobic001G260000 Sobic001G260000 Sobic007G158700--Sobic001G260000 Sobic002G182500 Sobic002G182500 Sobic007G158700--Sobic002G182500 Sobic004G115500 Sobic004G115500 Sobic007G158700--Sobic004G115500 Sobic007G169500 Sobic007G169500 Sobic007G158700--Sobic007G169500 Sobic007G158700--Sobic002G379100 Sobic010G179400--Sobic004G115500 Sobic010G179400--Sobic007G169500 Sobic004G341000 Sobic004G341000 Sobic010G179400--Sobic004G341000 Sobic002G100832 Sobic002G100832 Sobic010G179400--Sobic002G100832 Sobic010G179400--Sobic008G054150 Sobic010G179400--Sobic002G379100 Sobic010G179400--Sobic009G009400 Sobic006G057500 Sobic006G057500 Sobic010G179400--Sobic006G057500 Sobic004G037000 Sobic004G037000 Sobic010G179400--Sobic004G037000 Sobic008G029400--Sobic004G228500 Sobic008G029400--Sobic001G260000 Sobic003G060100 Sobic003G060100 Sobic008G029400--Sobic003G060100 Sobic009G144700 Sobic009G144700 Sobic008G029400--Sobic009G144700 Sobic008G029400--Sobic008G054150 Sobic004G108200 Sobic004G108200 Sobic008G029400--Sobic004G108200 Sobic006G207000 Sobic006G207000 Sobic008G029400--Sobic006G207000 Sobic006G104700 Sobic006G104700 Sobic008G029400--Sobic006G104700 Sobic003G211400 Sobic003G211400 Sobic008G029400--Sobic003G211400 Sobic001G403000--Sobic001G487300 Sobic009G072900 Sobic009G072900 Sobic001G403000--Sobic009G072900 Sobic008G063400 Sobic008G063400 Sobic001G403000--Sobic008G063400 Sobic003G437200 Sobic003G437200 Sobic001G403000--Sobic003G437200 Sobic005G206601 Sobic005G206601 Sobic001G403000--Sobic005G206601 Sobic009G240600 Sobic009G240600 Sobic001G403000--Sobic009G240600 Sobic002G375400 Sobic002G375400 Sobic001G403000--Sobic002G375400 Sobic003G417800 Sobic003G417800 Sobic001G403000--Sobic003G417800 Sobic010G185000 Sobic010G185000 Sobic001G403000--Sobic010G185000 Sobic001G487300--Sobic001G403000 Sobic004G221500 Sobic004G221500 Sobic001G487300--Sobic004G221500 Sobic006G084600 Sobic006G084600 Sobic001G487300--Sobic006G084600 Sobic001G487300--Sobic009G240600 Sobic010G084700 Sobic010G084700 Sobic001G487300--Sobic010G084700 Sobic001G348700 Sobic001G348700 Sobic001G487300--Sobic001G348700 Sobic001G487300--Sobic005G206601 Sobic004G071650 Sobic004G071650 Sobic001G487300--Sobic004G071650 Sobic001G476500 Sobic001G476500 Sobic001G487300--Sobic001G476500 Sobic001G343500--Sobic001G342700 Sobic001G343500--Sobic001G343601 Sobic001G343832 Sobic001G343832 Sobic001G343500--Sobic001G343832 Sobic001G343500--Sobic002G182500 Sobic004G128400 Sobic004G128400 Sobic001G343500--Sobic004G128400 Sobic001G343500--Sobic001G260000 Sobic001G343500--Sobic002G379100 Sobic006G033260 Sobic006G033260 Sobic001G343500--Sobic006G033260 Sobic002G146100 Sobic002G146100 Sobic001G343500--Sobic002G146100 Sobic002G210401--Sobic008G063400 Sobic002G210401--Sobic001G403000 Sobic006G044100 Sobic006G044100 Sobic002G210401--Sobic006G044100 Sobic002G210401--Sobic003G437200 Sobic003G264400 Sobic003G264400 Sobic002G210401--Sobic003G264400 Sobic002G210401--Sobic005G206601 Sobic009G061200 Sobic009G061200 Sobic002G210401--Sobic009G061200 Sobic006G277600 Sobic006G277600 Sobic002G210401--Sobic006G277600 Sobic010G084300 Sobic010G084300 Sobic002G210401--Sobic010G084300 Sobic004G228500--Sobic009G144700 Sobic004G228500--Sobic004G108200 Sobic004G352000 Sobic004G352000 Sobic004G228500--Sobic004G352000 Sobic001G330100 Sobic001G330100 Sobic004G228500--Sobic001G330100 Sobic001G471200 Sobic001G471200 Sobic004G228500--Sobic001G471200 Sobic007G155200 Sobic007G155200 Sobic004G228500--Sobic007G155200 Sobic009G183900 Sobic009G183900 Sobic004G228500--Sobic009G183900 Sobic003G148300 Sobic003G148300 Sobic004G228500--Sobic003G148300 Sobic002G388900 Sobic002G388900 Sobic004G228500--Sobic002G388900 Sobic007G094300 Sobic007G094300 Sobic002G099451--Sobic007G094300 Sobic004G121700 Sobic004G121700 Sobic002G099451--Sobic004G121700 Sobic004G083401 Sobic004G083401 Sobic002G099451--Sobic004G083401 Sobic006G072201 Sobic006G072201 Sobic002G099451--Sobic006G072201 Sobic005G110406 Sobic005G110406 Sobic002G099451--Sobic005G110406 Sobic007G047500 Sobic007G047500 Sobic002G099451--Sobic007G047500 Sobic002G099451--Sobic010G179400 Sobic008G148200 Sobic008G148200 Sobic002G099451--Sobic008G148200 Sobic002G261300 Sobic002G261300 Sobic002G099451--Sobic002G261300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.