Gene annotation
Transcriptome id Sobic.001G343601.1
Synonym -
Functional annotation -
UniProt A0A1Z5S9M9
Pfam PF07993
Panther DB PTHR10366 PTHR10366:SF242
NCBI CDD KOG1430; C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases
KEGG Orthology K07748; NSDHL, sterol-4alpha-carboxylate 3-dehydrogenase (decarboxylating)
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G47290 : 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 1
RAP-DB (Rice) LOC_Os03g29170.1 : sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating, putative, expressed
MaizeGDB (Corn) Zm00025a002788
Brachypodium -
Barley HORVU7Hr1G118180.6 , HORVU7Hr1G118180.4 , HORVU7Hr1G118180.5 , HORVU7Hr1G118180.2 , HORVU7Hr1G118180.3 , HORVU7Hr1G118180.1
Wheat TraesCS5D02G006300 , TraesCS6B02G182000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G009400 expressed protein -
2 Sobic.008G054150 - -
3 Sobic.001G342700 protein phosphotase protein, putative, expressed -
4 Sobic.001G260000 SAP domain containing protein, expressed -
5 Sobic.007G169500 expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@Ribosomal protein L1p/L10e family("PubMedID : 26759170,PubMedID : 24597475")@L1P family of ribosomal proteins domain containing protein, expressed K02865: RP-L10Ae, large subunit ribosomal protein L10Ae
6 Sobic.002G146100 - -
7 Sobic.004G115500 expressed protein -
8 Sobic.006G033260 - -
9 Sobic.007G158700 expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@phospholipase A("PubMedID : 26759170,PubMedID : 24597475")@patatin, putative, expressed -
10 Sobic.002G182500 nucleic acid binding protein, putative, expressed -
11 Sobic.001G357100 ZOS9-11 - C2H2 zinc finger protein, expressed -
12 Sobic.009G043700 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
13 Sobic.001G231600 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K00059: fabG, 3-oxoacyl-[acyl-carrier protein] reductase
14 Sobic.007G067300 Cupin domain containing protein, expressed -
15 Sobic.001G343500 sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating, putative, expressed K07748: NSDHL, sterol-4alpha-carboxylate 3-dehydrogenase (decarboxylating)
16 Sobic.004G128400 O-methyltransferase, putative, expressed -
17 Sobic.001G495116 - -
18 Sobic.004G311750 - -
19 Sobic.005G169100 cytochrome P450, putative, expressed -
20 Sobic.004G037000 tRNA synthetases class II domain containing protein, expressed K01876: aspartyl-tRNA synthetase


Gene co-expression network
sample Sobic001G343601 Sobic001G343601 Sobic009G009400 Sobic009G009400 Sobic001G343601--Sobic009G009400 Sobic008G054150 Sobic008G054150 Sobic001G343601--Sobic008G054150 Sobic001G342700 Sobic001G342700 Sobic001G343601--Sobic001G342700 Sobic001G260000 Sobic001G260000 Sobic001G343601--Sobic001G260000 Sobic007G169500 Sobic007G169500 Sobic001G343601--Sobic007G169500 Sobic002G146100 Sobic002G146100 Sobic001G343601--Sobic002G146100 Sobic004G115500 Sobic004G115500 Sobic001G343601--Sobic004G115500 Sobic006G033260 Sobic006G033260 Sobic001G343601--Sobic006G033260 Sobic007G158700 Sobic007G158700 Sobic001G343601--Sobic007G158700 Sobic009G009400--Sobic001G343601 Sobic009G009400--Sobic007G169500 Sobic009G009400--Sobic008G054150 Sobic009G009400--Sobic001G342700 Sobic009G043700 Sobic009G043700 Sobic009G009400--Sobic009G043700 Sobic009G009400--Sobic004G115500 Sobic009G009400--Sobic001G260000 Sobic009G009400--Sobic002G146100 Sobic002G182500 Sobic002G182500 Sobic009G009400--Sobic002G182500 Sobic008G054150--Sobic007G169500 Sobic008G054150--Sobic001G260000 Sobic008G054150--Sobic001G343601 Sobic008G054150--Sobic009G009400 Sobic008G054150--Sobic004G115500 Sobic008G054150--Sobic002G146100 Sobic006G057500 Sobic006G057500 Sobic008G054150--Sobic006G057500 Sobic004G341000 Sobic004G341000 Sobic008G054150--Sobic004G341000 Sobic004G311750 Sobic004G311750 Sobic008G054150--Sobic004G311750 Sobic007G067300 Sobic007G067300 Sobic001G342700--Sobic007G067300 Sobic001G342700--Sobic001G343601 Sobic001G342700--Sobic009G009400 Sobic005G169100 Sobic005G169100 Sobic001G342700--Sobic005G169100 Sobic001G342700--Sobic002G146100 Sobic001G342700--Sobic006G033260 Sobic001G342700--Sobic002G182500 Sobic008G068166 Sobic008G068166 Sobic001G342700--Sobic008G068166 Sobic001G342700--Sobic008G054150 Sobic001G260000--Sobic008G054150 Sobic001G260000--Sobic001G343601 Sobic001G260000--Sobic007G169500 Sobic001G260000--Sobic009G009400 Sobic001G260000--Sobic004G311750 Sobic001G260000--Sobic004G115500 Sobic001G260000--Sobic002G146100 Sobic008G029400 Sobic008G029400 Sobic001G260000--Sobic008G029400 Sobic001G260000--Sobic002G182500 Sobic007G169500--Sobic008G054150 Sobic007G169500--Sobic009G009400 Sobic007G169500--Sobic001G343601 Sobic007G169500--Sobic004G115500 Sobic007G169500--Sobic001G260000 Sobic001G357100 Sobic001G357100 Sobic007G169500--Sobic001G357100 Sobic007G169500--Sobic006G057500 Sobic007G169500--Sobic009G043700 Sobic007G169500--Sobic002G146100 Sobic002G146100--Sobic001G343601 Sobic002G146100--Sobic001G342700 Sobic002G146100--Sobic009G009400 Sobic002G146100--Sobic008G054150 Sobic002G146100--Sobic001G260000 Sobic002G146100--Sobic006G033260 Sobic002G146100--Sobic007G169500 Sobic001G343832 Sobic001G343832 Sobic002G146100--Sobic001G343832 Sobic002G146100--Sobic002G182500 Sobic004G115500--Sobic001G357100 Sobic004G115500--Sobic007G169500 Sobic004G115500--Sobic008G054150 Sobic004G115500--Sobic009G009400 Sobic004G115500--Sobic001G343601 Sobic004G115500--Sobic009G043700 Sobic010G084600 Sobic010G084600 Sobic004G115500--Sobic010G084600 Sobic004G115500--Sobic004G341000 Sobic004G037000 Sobic004G037000 Sobic004G115500--Sobic004G037000 Sobic006G033260--Sobic001G342700 Sobic006G033260--Sobic001G343601 Sobic006G033260--Sobic002G146100 Sobic006G033260--Sobic001G357100 Sobic006G033260--Sobic008G054150 Sobic006G033260--Sobic009G009400 Sobic006G033260--Sobic007G067300 Sobic006G033260--Sobic007G169500 Sobic006G033260--Sobic001G260000 Sobic007G158700--Sobic001G343601 Sobic007G158700--Sobic009G009400 Sobic007G158700--Sobic008G054150 Sobic007G158700--Sobic001G342700 Sobic007G158700--Sobic001G260000 Sobic007G158700--Sobic002G182500 Sobic007G158700--Sobic004G115500 Sobic007G158700--Sobic007G169500 Sobic002G379100 Sobic002G379100 Sobic007G158700--Sobic002G379100
Octagon: transcription factors


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