Gene annotation
Transcriptome id Sobic.007G169500.1
Synonym Sb07g024200,
Functional annotation expressed high in San Chi San (an efficient nitrogen user) (PubMedID : 28697783)
Ribosomal protein L1p/L10e family( (PubMedID : 26759170,(PubMedID : 24597475)
L1P family of ribosomal proteins domain containing protein, expressed
UniProt -
Pfam PF00687
Panther DB PTHR23105 PTHR23105:SF44
NCBI CDD KOG1570; 60S ribosomal protein L10A
KEGG Orthology K02865; RP-L10Ae, large subunit ribosomal protein L10Ae
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G08360 : Ribosomal protein L1p/L10e family
RAP-DB (Rice) LOC_Os08g44380.2 : L1P family of ribosomal proteins domain containing protein, expressed
MaizeGDB (Corn) Zm00025a044113 , Zm00025a038585 , Zm00025a030557 , Zm00025a010459 , Zm00025a005609
Brachypodium KQJ99358 , KQJ99359 , KQK10701 , KQJ91586 , KQJ99355 , KQJ99356 , KQJ99357
Barley HORVU7Hr1G059090.4 , HORVU7Hr1G059090.5 , HORVU7Hr1G059090.6 , HORVU7Hr1G059090.7 , HORVU7Hr1G059090.1 , HORVU7Hr1G059090.2 , HORVU7Hr1G059090.3 , HORVU4Hr1G001350.8 , HORVU4Hr1G001350.9 , HORVU4Hr1G001350.3 , HORVU4Hr1G001350.2 , HORVU7Hr1G059090.8 , HORVU7Hr1G059090.9 , HORVU4Hr1G001350.7 , HORVU4Hr1G001350.6 , HORVU4Hr1G001350.1 , HORVU4Hr1G001350.5 , HORVU4Hr1G001350.15 , HORVU4Hr1G001350.14 , HORVU4Hr1G001350.17 , HORVU4Hr1G001350.16 , HORVU4Hr1G001350.11 , HORVU4Hr1G001350.10 , HORVU4Hr1G001350.13 , HORVU4Hr1G001350.12
Wheat TraesCS4B02G007300 , TraesCS7B02G176600 , TraesCS3A02G372600 , TraesCS3A02G372600 , TraesCS4D02G007500 , TraesCS4D02G007500 , TraesCS4A02G305300 , TraesCS7D02G278500 , TraesCS7A02G278700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G054150 - -
2 Sobic.009G009400 expressed protein -
3 Sobic.001G343601 - K07748: NSDHL, sterol-4alpha-carboxylate 3-dehydrogenase (decarboxylating)
4 Sobic.004G115500 expressed protein -
5 Sobic.001G260000 SAP domain containing protein, expressed -
6 Sobic.001G357100 ZOS9-11 - C2H2 zinc finger protein, expressed -
7 Sobic.006G057500 flavonol sulfotransferase, putative, expressed -
8 Sobic.009G043700 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
9 Sobic.002G146100 - -
10 Sobic.004G341000 OsFBX66 - F-box domain containing protein, expressed -
11 Sobic.002G100832 - -
12 Sobic.001G342700 protein phosphotase protein, putative, expressed -
13 Sobic.005G120201 - -
14 Sobic.010G179400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed K08237: hydroquinone glucosyltransferase
15 Sobic.007G158700 expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@phospholipase A("PubMedID : 26759170,PubMedID : 24597475")@patatin, putative, expressed -
16 Sobic.006G033260 - -
17 Sobic.001G279701 - -
18 Sobic.006G091800 12-oxophytodienoate reductase, putative, expressed K05894: 12-oxophytodienoic acid reductase
19 Sobic.004G311750 - -
20 Sobic.008G068166 - -


Gene co-expression network
sample Sobic007G169500 Sobic007G169500 Sobic008G054150 Sobic008G054150 Sobic007G169500--Sobic008G054150 Sobic009G009400 Sobic009G009400 Sobic007G169500--Sobic009G009400 Sobic001G343601 Sobic001G343601 Sobic007G169500--Sobic001G343601 Sobic004G115500 Sobic004G115500 Sobic007G169500--Sobic004G115500 Sobic001G260000 Sobic001G260000 Sobic007G169500--Sobic001G260000 Sobic001G357100 Sobic001G357100 Sobic007G169500--Sobic001G357100 Sobic006G057500 Sobic006G057500 Sobic007G169500--Sobic006G057500 Sobic009G043700 Sobic009G043700 Sobic007G169500--Sobic009G043700 Sobic002G146100 Sobic002G146100 Sobic007G169500--Sobic002G146100 Sobic008G054150--Sobic007G169500 Sobic008G054150--Sobic001G260000 Sobic008G054150--Sobic001G343601 Sobic008G054150--Sobic009G009400 Sobic008G054150--Sobic004G115500 Sobic008G054150--Sobic002G146100 Sobic008G054150--Sobic006G057500 Sobic004G341000 Sobic004G341000 Sobic008G054150--Sobic004G341000 Sobic004G311750 Sobic004G311750 Sobic008G054150--Sobic004G311750 Sobic009G009400--Sobic001G343601 Sobic009G009400--Sobic007G169500 Sobic009G009400--Sobic008G054150 Sobic001G342700 Sobic001G342700 Sobic009G009400--Sobic001G342700 Sobic009G009400--Sobic009G043700 Sobic009G009400--Sobic004G115500 Sobic009G009400--Sobic001G260000 Sobic009G009400--Sobic002G146100 Sobic002G182500 Sobic002G182500 Sobic009G009400--Sobic002G182500 Sobic001G343601--Sobic009G009400 Sobic001G343601--Sobic008G054150 Sobic001G343601--Sobic001G342700 Sobic001G343601--Sobic001G260000 Sobic001G343601--Sobic007G169500 Sobic001G343601--Sobic002G146100 Sobic001G343601--Sobic004G115500 Sobic006G033260 Sobic006G033260 Sobic001G343601--Sobic006G033260 Sobic007G158700 Sobic007G158700 Sobic001G343601--Sobic007G158700 Sobic004G115500--Sobic001G357100 Sobic004G115500--Sobic007G169500 Sobic004G115500--Sobic008G054150 Sobic004G115500--Sobic009G009400 Sobic004G115500--Sobic001G343601 Sobic004G115500--Sobic009G043700 Sobic010G084600 Sobic010G084600 Sobic004G115500--Sobic010G084600 Sobic004G115500--Sobic004G341000 Sobic004G037000 Sobic004G037000 Sobic004G115500--Sobic004G037000 Sobic001G260000--Sobic008G054150 Sobic001G260000--Sobic001G343601 Sobic001G260000--Sobic007G169500 Sobic001G260000--Sobic009G009400 Sobic001G260000--Sobic004G311750 Sobic001G260000--Sobic004G115500 Sobic001G260000--Sobic002G146100 Sobic008G029400 Sobic008G029400 Sobic001G260000--Sobic008G029400 Sobic001G260000--Sobic002G182500 Sobic001G357100--Sobic004G115500 Sobic003G307300 Sobic003G307300 Sobic001G357100--Sobic003G307300 Sobic001G357100--Sobic007G169500 Sobic001G357100--Sobic001G343601 Sobic001G357100--Sobic009G009400 Sobic001G279701 Sobic001G279701 Sobic001G357100--Sobic001G279701 Sobic007G155200 Sobic007G155200 Sobic001G357100--Sobic007G155200 Sobic001G357100--Sobic008G054150 Sobic001G357100--Sobic010G084600 Sobic002G100832 Sobic002G100832 Sobic006G057500--Sobic002G100832 Sobic004G165800 Sobic004G165800 Sobic006G057500--Sobic004G165800 Sobic006G057500--Sobic004G341000 Sobic004G263100 Sobic004G263100 Sobic006G057500--Sobic004G263100 Sobic001G065900 Sobic001G065900 Sobic006G057500--Sobic001G065900 Sobic002G102132 Sobic002G102132 Sobic006G057500--Sobic002G102132 Sobic007G159100 Sobic007G159100 Sobic006G057500--Sobic007G159100 Sobic006G057500--Sobic007G169500 Sobic006G057500--Sobic008G054150 Sobic009G043700--Sobic009G009400 Sobic009G043700--Sobic004G115500 Sobic009G043700--Sobic007G169500 Sobic009G043700--Sobic001G343601 Sobic009G043700--Sobic008G054150 Sobic009G043700--Sobic001G357100 Sobic009G043700--Sobic001G342700 Sobic001G495148 Sobic001G495148 Sobic009G043700--Sobic001G495148 Sobic008G068166 Sobic008G068166 Sobic009G043700--Sobic008G068166 Sobic002G146100--Sobic001G343601 Sobic002G146100--Sobic001G342700 Sobic002G146100--Sobic009G009400 Sobic002G146100--Sobic008G054150 Sobic002G146100--Sobic001G260000 Sobic002G146100--Sobic006G033260 Sobic002G146100--Sobic007G169500 Sobic001G343832 Sobic001G343832 Sobic002G146100--Sobic001G343832 Sobic002G146100--Sobic002G182500
Octagon: transcription factors


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