Gene annotation
Transcriptome id Sobic.001G343500.1
Synonym 3BETAHSD/D1, AT3BETAHSD/D1, Sb01g032980
Functional annotation sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating, putative, expressed
UniProt C5WXI1
Pfam PF01370
Panther DB PTHR10366 PTHR10366:SF242
NCBI CDD KOG1430; C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases
KEGG Orthology K07748; NSDHL, sterol-4alpha-carboxylate 3-dehydrogenase (decarboxylating)
Gene Ontology GO:0003824; catalytic activity


Orthologs (automatic annotation)
TAIR AT1G47290 : 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 1
RAP-DB (Rice) LOC_Os03g29170.1 : sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating, putative, expressed
MaizeGDB (Corn) Zm00025a052162 , Zm00025a002788
Brachypodium -
Barley HORVU7Hr1G118180.6 , HORVU7Hr1G118180.4 , HORVU7Hr1G118180.5 , HORVU7Hr1G118180.2 , HORVU7Hr1G118180.3 , HORVU7Hr1G118180.1
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G342700 protein phosphotase protein, putative, expressed -
2 Sobic.001G343601 - K07748: NSDHL, sterol-4alpha-carboxylate 3-dehydrogenase (decarboxylating)
3 Sobic.001G343832 - -
4 Sobic.002G182500 nucleic acid binding protein, putative, expressed -
5 Sobic.004G128400 O-methyltransferase, putative, expressed -
6 Sobic.001G260000 SAP domain containing protein, expressed -
7 Sobic.002G379100 dehydrogenase, putative, expressed -
8 Sobic.006G033260 - -
9 Sobic.002G146100 - -
10 Sobic.009G009400 expressed protein -
11 Sobic.002G182400 - -
12 Sobic.007G158700 expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@phospholipase A("PubMedID : 26759170,PubMedID : 24597475")@patatin, putative, expressed -
13 Sobic.001G231600 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K00059: fabG, 3-oxoacyl-[acyl-carrier protein] reductase
14 Sobic.008G054150 - -
15 Sobic.008G063400 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
16 Sobic.007G067300 Cupin domain containing protein, expressed -
17 Sobic.001G495164 - -
18 Sobic.002G210401 - -
19 Sobic.005G169100 cytochrome P450, putative, expressed -
20 Sobic.010G084300 highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@12-oxophytodienoate reductase, putative, expressed K05894: 12-oxophytodienoic acid reductase


Gene co-expression network
sample Sobic001G343500 Sobic001G343500 Sobic001G342700 Sobic001G342700 Sobic001G343500--Sobic001G342700 Sobic001G343601 Sobic001G343601 Sobic001G343500--Sobic001G343601 Sobic001G343832 Sobic001G343832 Sobic001G343500--Sobic001G343832 Sobic002G182500 Sobic002G182500 Sobic001G343500--Sobic002G182500 Sobic004G128400 Sobic004G128400 Sobic001G343500--Sobic004G128400 Sobic001G260000 Sobic001G260000 Sobic001G343500--Sobic001G260000 Sobic002G379100 Sobic002G379100 Sobic001G343500--Sobic002G379100 Sobic006G033260 Sobic006G033260 Sobic001G343500--Sobic006G033260 Sobic002G146100 Sobic002G146100 Sobic001G343500--Sobic002G146100 Sobic007G067300 Sobic007G067300 Sobic001G342700--Sobic007G067300 Sobic001G342700--Sobic001G343601 Sobic009G009400 Sobic009G009400 Sobic001G342700--Sobic009G009400 Sobic005G169100 Sobic005G169100 Sobic001G342700--Sobic005G169100 Sobic001G342700--Sobic002G146100 Sobic001G342700--Sobic006G033260 Sobic001G342700--Sobic002G182500 Sobic008G068166 Sobic008G068166 Sobic001G342700--Sobic008G068166 Sobic008G054150 Sobic008G054150 Sobic001G342700--Sobic008G054150 Sobic001G343601--Sobic009G009400 Sobic001G343601--Sobic008G054150 Sobic001G343601--Sobic001G342700 Sobic001G343601--Sobic001G260000 Sobic007G169500 Sobic007G169500 Sobic001G343601--Sobic007G169500 Sobic001G343601--Sobic002G146100 Sobic004G115500 Sobic004G115500 Sobic001G343601--Sobic004G115500 Sobic001G343601--Sobic006G033260 Sobic007G158700 Sobic007G158700 Sobic001G343601--Sobic007G158700 Sobic001G343832--Sobic002G146100 Sobic001G343832--Sobic001G343500 Sobic001G343832--Sobic006G033260 Sobic001G343832--Sobic001G343601 Sobic001G343832--Sobic001G342700 Sobic008G029400 Sobic008G029400 Sobic001G343832--Sobic008G029400 Sobic001G343832--Sobic002G379100 Sobic001G357100 Sobic001G357100 Sobic001G343832--Sobic001G357100 Sobic001G343832--Sobic008G054150 Sobic002G182500--Sobic004G128400 Sobic002G182500--Sobic001G342700 Sobic002G182500--Sobic001G343601 Sobic002G182400 Sobic002G182400 Sobic002G182500--Sobic002G182400 Sobic002G182500--Sobic009G009400 Sobic002G182500--Sobic005G169100 Sobic006G036500 Sobic006G036500 Sobic002G182500--Sobic006G036500 Sobic002G183100 Sobic002G183100 Sobic002G182500--Sobic002G183100 Sobic002G182500--Sobic001G260000 Sobic001G231600 Sobic001G231600 Sobic004G128400--Sobic001G231600 Sobic004G128400--Sobic002G182500 Sobic001G320400 Sobic001G320400 Sobic004G128400--Sobic001G320400 Sobic001G331301 Sobic001G331301 Sobic004G128400--Sobic001G331301 Sobic007G135201 Sobic007G135201 Sobic004G128400--Sobic007G135201 Sobic001G495164 Sobic001G495164 Sobic004G128400--Sobic001G495164 Sobic010G117900 Sobic010G117900 Sobic004G128400--Sobic010G117900 Sobic007G067600 Sobic007G067600 Sobic004G128400--Sobic007G067600 Sobic010G084700 Sobic010G084700 Sobic004G128400--Sobic010G084700 Sobic001G260000--Sobic008G054150 Sobic001G260000--Sobic001G343601 Sobic001G260000--Sobic007G169500 Sobic001G260000--Sobic009G009400 Sobic004G311750 Sobic004G311750 Sobic001G260000--Sobic004G311750 Sobic001G260000--Sobic004G115500 Sobic001G260000--Sobic002G146100 Sobic001G260000--Sobic008G029400 Sobic001G260000--Sobic002G182500 Sobic002G379100--Sobic007G158700 Sobic010G179400 Sobic010G179400 Sobic002G379100--Sobic010G179400 Sobic002G379100--Sobic008G029400 Sobic001G403000 Sobic001G403000 Sobic002G379100--Sobic001G403000 Sobic001G487300 Sobic001G487300 Sobic002G379100--Sobic001G487300 Sobic002G379100--Sobic001G343500 Sobic002G210401 Sobic002G210401 Sobic002G379100--Sobic002G210401 Sobic004G228500 Sobic004G228500 Sobic002G379100--Sobic004G228500 Sobic002G099451 Sobic002G099451 Sobic002G379100--Sobic002G099451 Sobic006G033260--Sobic001G342700 Sobic006G033260--Sobic001G343601 Sobic006G033260--Sobic002G146100 Sobic006G033260--Sobic001G357100 Sobic006G033260--Sobic008G054150 Sobic006G033260--Sobic009G009400 Sobic006G033260--Sobic007G067300 Sobic006G033260--Sobic007G169500 Sobic006G033260--Sobic001G260000 Sobic002G146100--Sobic001G343601 Sobic002G146100--Sobic001G342700 Sobic002G146100--Sobic009G009400 Sobic002G146100--Sobic008G054150 Sobic002G146100--Sobic001G260000 Sobic002G146100--Sobic006G033260 Sobic002G146100--Sobic007G169500 Sobic002G146100--Sobic001G343832 Sobic002G146100--Sobic002G182500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.