Gene annotation
Transcriptome id Sobic.006G105000.2,Sobic.006G105000.1
Synonym Sb06g018810
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence (PubMedID : 27586543)
aldose 1-epimerase, putative, expressed
UniProt C5Y9T1
Pfam PF01263
Panther DB PTHR10091 PTHR10091:SF13
NCBI CDD KOG1604; Predicted mutarotase
KEGG Orthology K01785; galM, aldose 1-epimerase
Gene Ontology GO:0016853; isomerase activity GO:0005975carbohydrate metabolic process


Orthologs (automatic annotation)
TAIR AT5G15140 : Galactose mutarotase-like superfamily protein
RAP-DB (Rice) LOC_Os04g38540.1 : aldose 1-epimerase, putative, expressed
MaizeGDB (Corn) Zm00025a011133 , Zm00025a011135 , Zm00025a056196
Brachypodium -
Barley -
Wheat TraesCS2B02G341300 , TraesCS2B02G341300
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G157900 C2 domain containing protein, putative, expressed -
2 Sobic.004G264000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cysteine-rich receptor-like protein kinase 7 precursor, putative, expressed -
3 Sobic.002G219400 oxidoreductase/ transition metal ion binding protein, putative, expressed -
4 Sobic.009G240600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phospholipase, putative, expressed -
5 Sobic.007G218800 "caffeoylCoA O-methyltransferase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ (54% identity with SbCCoAOMT/70.9% similarity)(PubMedID : 27457122)@Functions are not investigated(PubMedID : 29721721)@caffeoyl-CoA O-methyltransferase, putative, expressed K18883: tricin synthase
6 Sobic.010G001000 expressed protein -
7 Sobic.003G404600 regulatory protein, putative, expressed -
8 Sobic.003G399700 LTPL38 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
9 Sobic.002G261300 expressed protein -
10 Sobic.010G028200 GDP-mannose 4,6 dehydratase 2, putative, expressed K01711: gmd, GDPmannose 4,6-dehydratase
11 Sobic.001G302600 LTPL147 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
12 Sobic.004G042000 apoptosis-inducing factor 2, putative, expressed -
13 Sobic.004G349125 - -
14 Sobic.008G102800 expressed protein -
15 Sobic.003G311800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@xylosyltransferase, putative, expressed -
16 Sobic.006G274933 - -
17 Sobic.001G147900 cytochrome P450, putative, expressed -
18 Sobic.002G327400 TKL_IRAK_DUF26-lc22 - DUF26 kinases have homology to DUF26 containing loci, expressed -
19 Sobic.003G366600 anthocyanidin 3-O-glucosyltransferase, putative, expressed -
20 Sobic.001G300500 expansin precursor, putative, expressed -


Gene co-expression network
sample Sobic006G105000 Sobic006G105000 Sobic006G157900 Sobic006G157900 Sobic006G105000--Sobic006G157900 Sobic004G264000 Sobic004G264000 Sobic006G105000--Sobic004G264000 Sobic002G219400 Sobic002G219400 Sobic006G105000--Sobic002G219400 Sobic009G240600 Sobic009G240600 Sobic006G105000--Sobic009G240600 Sobic007G218800 Sobic007G218800 Sobic006G105000--Sobic007G218800 Sobic010G001000 Sobic010G001000 Sobic006G105000--Sobic010G001000 Sobic003G404600 Sobic003G404600 Sobic006G105000--Sobic003G404600 Sobic003G399700 Sobic003G399700 Sobic006G105000--Sobic003G399700 Sobic002G261300 Sobic002G261300 Sobic006G105000--Sobic002G261300 Sobic006G157900--Sobic010G001000 Sobic003G366600 Sobic003G366600 Sobic006G157900--Sobic003G366600 Sobic003G007600 Sobic003G007600 Sobic006G157900--Sobic003G007600 Sobic006G103000 Sobic006G103000 Sobic006G157900--Sobic006G103000 Sobic003G311800 Sobic003G311800 Sobic006G157900--Sobic003G311800 Sobic001G302600 Sobic001G302600 Sobic006G157900--Sobic001G302600 Sobic004G202400 Sobic004G202400 Sobic006G157900--Sobic004G202400 Sobic010G270500 Sobic010G270500 Sobic006G157900--Sobic010G270500 Sobic002G336700 Sobic002G336700 Sobic006G157900--Sobic002G336700 Sobic001G481400 Sobic001G481400 Sobic004G264000--Sobic001G481400 Sobic004G046200 Sobic004G046200 Sobic004G264000--Sobic004G046200 Sobic010G184800 Sobic010G184800 Sobic004G264000--Sobic010G184800 Sobic002G287100 Sobic002G287100 Sobic004G264000--Sobic002G287100 Sobic007G169900 Sobic007G169900 Sobic004G264000--Sobic007G169900 Sobic008G186100 Sobic008G186100 Sobic004G264000--Sobic008G186100 Sobic001G500000 Sobic001G500000 Sobic004G264000--Sobic001G500000 Sobic006G044100 Sobic006G044100 Sobic004G264000--Sobic006G044100 Sobic006G136800 Sobic006G136800 Sobic004G264000--Sobic006G136800 Sobic002G219400--Sobic003G399700 Sobic001G231900 Sobic001G231900 Sobic002G219400--Sobic001G231900 Sobic010G088800 Sobic010G088800 Sobic002G219400--Sobic010G088800 Sobic006G274933 Sobic006G274933 Sobic002G219400--Sobic006G274933 Sobic002G219400--Sobic001G302600 Sobic002G219400--Sobic006G105000 Sobic007G021700 Sobic007G021700 Sobic002G219400--Sobic007G021700 Sobic010G063033 Sobic010G063033 Sobic002G219400--Sobic010G063033 Sobic001G304201 Sobic001G304201 Sobic002G219400--Sobic001G304201 Sobic009G240600--Sobic001G481400 Sobic007G227300 Sobic007G227300 Sobic009G240600--Sobic007G227300 Sobic001G231700 Sobic001G231700 Sobic009G240600--Sobic001G231700 Sobic009G240600--Sobic006G103000 Sobic009G240600--Sobic001G500000 Sobic009G240600--Sobic002G287100 Sobic001G476500 Sobic001G476500 Sobic009G240600--Sobic001G476500 Sobic003G417800 Sobic003G417800 Sobic009G240600--Sobic003G417800 Sobic001G192200 Sobic001G192200 Sobic009G240600--Sobic001G192200 Sobic008G055100 Sobic008G055100 Sobic007G218800--Sobic008G055100 Sobic002G154600 Sobic002G154600 Sobic007G218800--Sobic002G154600 Sobic007G176000 Sobic007G176000 Sobic007G218800--Sobic007G176000 Sobic010G252500 Sobic010G252500 Sobic007G218800--Sobic010G252500 Sobic009G088900 Sobic009G088900 Sobic007G218800--Sobic009G088900 Sobic007G218800--Sobic003G311800 Sobic001G430100 Sobic001G430100 Sobic007G218800--Sobic001G430100 Sobic001G049900 Sobic001G049900 Sobic007G218800--Sobic001G049900 Sobic010G085800 Sobic010G085800 Sobic007G218800--Sobic010G085800 Sobic004G042000 Sobic004G042000 Sobic010G001000--Sobic004G042000 Sobic010G001000--Sobic006G157900 Sobic010G063000 Sobic010G063000 Sobic010G001000--Sobic010G063000 Sobic010G001000--Sobic001G302600 Sobic010G001000--Sobic001G500000 Sobic010G185000 Sobic010G185000 Sobic010G001000--Sobic010G185000 Sobic010G001000--Sobic006G103000 Sobic001G318500 Sobic001G318500 Sobic010G001000--Sobic001G318500 Sobic006G059700 Sobic006G059700 Sobic010G001000--Sobic006G059700 Sobic003G404600--Sobic006G059700 Sobic003G404600--Sobic003G366600 Sobic001G147900 Sobic001G147900 Sobic003G404600--Sobic001G147900 Sobic003G404600--Sobic010G185000 Sobic006G197100 Sobic006G197100 Sobic003G404600--Sobic006G197100 Sobic004G227800 Sobic004G227800 Sobic003G404600--Sobic004G227800 Sobic004G024100 Sobic004G024100 Sobic003G404600--Sobic004G024100 Sobic004G348400 Sobic004G348400 Sobic003G404600--Sobic004G348400 Sobic004G349125 Sobic004G349125 Sobic003G404600--Sobic004G349125 Sobic002G234400 Sobic002G234400 Sobic003G399700--Sobic002G234400 Sobic003G399700--Sobic001G231900 Sobic006G172550 Sobic006G172550 Sobic003G399700--Sobic006G172550 Sobic006G198700 Sobic006G198700 Sobic003G399700--Sobic006G198700 Sobic004G292900 Sobic004G292900 Sobic003G399700--Sobic004G292900 Sobic006G172500 Sobic006G172500 Sobic003G399700--Sobic006G172500 Sobic003G399700--Sobic001G302600 Sobic002G250000 Sobic002G250000 Sobic003G399700--Sobic002G250000 Sobic003G399700--Sobic002G219400 Sobic007G164400 Sobic007G164400 Sobic002G261300--Sobic007G164400 Sobic007G030501 Sobic007G030501 Sobic002G261300--Sobic007G030501 Sobic001G159900 Sobic001G159900 Sobic002G261300--Sobic001G159900 Sobic004G234100 Sobic004G234100 Sobic002G261300--Sobic004G234100 Sobic001G434800 Sobic001G434800 Sobic002G261300--Sobic001G434800 Sobic006G277800 Sobic006G277800 Sobic002G261300--Sobic006G277800 Sobic001G360400 Sobic001G360400 Sobic002G261300--Sobic001G360400 Sobic002G354200 Sobic002G354200 Sobic002G261300--Sobic002G354200 Sobic002G261300--Sobic002G250000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.