Gene annotation
Transcriptome id Sobic.006G274300.1
Synonym NHL2, Sb06g033570
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
harpin-induced protein 1 domain containing protein, expressed
UniProt A0A1Z5RGP3
Pfam PF03168
Panther DB PTHR31415 PTHR31415:SF18
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G11650 : NDR1/HIN1-like 2
RAP-DB (Rice) LOC_Os04g58850.1 : harpin-induced protein 1 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a057431 , Zm00025a009234
Brachypodium KQJ85370
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.006G274300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G209800 harpin-induced protein 1 domain containing protein, expressed -
2 Sobic.001G035000 ZOS3-22 - C2H2 zinc finger protein, expressed -
3 Sobic.004G032300 OsSGL(Ortholog in rice:Wang et al. (2016))(PubMedID : 31659876)@DUF1645 domain containing protein, putative, expressed -
4 Sobic.005G037000 cytochrome P450, putative, expressed -
5 Sobic.001G077400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed K01723: hydroperoxide dehydratase
6 Sobic.006G273800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CAF1 family ribonuclease containing protein, putative, expressed K12581: CNOT7_8, CAF1, CCR4-NOT transcription complex subunit 7/8
7 Sobic.009G217600 STE_MEKK_ste11_MAP3K.19 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
8 Sobic.001G441100 immediate-early fungal elicitor protein CMPG1, putative, expressed -
9 Sobic.007G126300 spotted leaf 11, putative, expressed -
10 Sobic.001G538866 - -
11 Sobic.010G234000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@EF hand family protein, putative, expressed -
12 Sobic.007G122500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.009G217500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@STE_MEKK_ste11_MAP3K.18 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
14 Sobic.004G280900 zinc finger, C3HC4 type domain containing protein, expressed -
15 Sobic.002G131800 copine, putative, expressed K16280: E3 ubiquitin-protein ligase RGLG
16 Sobic.001G341600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@tyrosine protein kinase domain containing protein, putative, expressed -
17 Sobic.006G026700 expressed protein -
18 Sobic.001G052300 expressed protein -
19 Sobic.010G023200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.001G192800 AAA-type ATPase family protein, putative, expressed -


Gene co-expression network
sample Sobic006G274300 Sobic006G274300 Sobic001G209800 Sobic001G209800 Sobic006G274300--Sobic001G209800 Sobic001G035000 Sobic001G035000 Sobic006G274300--Sobic001G035000 Sobic004G032300 Sobic004G032300 Sobic006G274300--Sobic004G032300 Sobic005G037000 Sobic005G037000 Sobic006G274300--Sobic005G037000 Sobic001G077400 Sobic001G077400 Sobic006G274300--Sobic001G077400 Sobic006G273800 Sobic006G273800 Sobic006G274300--Sobic006G273800 Sobic009G217600 Sobic009G217600 Sobic006G274300--Sobic009G217600 Sobic001G441100 Sobic001G441100 Sobic006G274300--Sobic001G441100 Sobic007G126300 Sobic007G126300 Sobic006G274300--Sobic007G126300 Sobic001G209800--Sobic001G077400 Sobic004G280900 Sobic004G280900 Sobic001G209800--Sobic004G280900 Sobic001G209800--Sobic009G217600 Sobic001G209800--Sobic001G035000 Sobic001G209800--Sobic005G037000 Sobic001G209800--Sobic001G441100 Sobic010G076600 Sobic010G076600 Sobic001G209800--Sobic010G076600 Sobic001G341600 Sobic001G341600 Sobic001G209800--Sobic001G341600 Sobic001G209800--Sobic006G274300 Sobic001G035000--Sobic001G441100 Sobic001G035000--Sobic001G077400 Sobic001G035000--Sobic009G217600 Sobic001G035000--Sobic005G037000 Sobic001G035000--Sobic001G341600 Sobic001G035000--Sobic001G209800 Sobic007G122500 Sobic007G122500 Sobic001G035000--Sobic007G122500 Sobic001G035000--Sobic007G126300 Sobic001G035000--Sobic004G280900 Sobic010G234000 Sobic010G234000 Sobic004G032300--Sobic010G234000 Sobic004G032300--Sobic007G122500 Sobic004G032300--Sobic001G035000 Sobic004G032300--Sobic006G274300 Sobic004G032300--Sobic006G273800 Sobic004G032300--Sobic005G037000 Sobic004G032300--Sobic001G441100 Sobic009G217500 Sobic009G217500 Sobic004G032300--Sobic009G217500 Sobic004G032300--Sobic009G217600 Sobic005G037000--Sobic001G077400 Sobic005G037000--Sobic004G280900 Sobic005G037000--Sobic001G441100 Sobic005G037000--Sobic001G035000 Sobic005G037000--Sobic001G209800 Sobic005G037000--Sobic009G217600 Sobic005G037000--Sobic007G126300 Sobic001G259600 Sobic001G259600 Sobic005G037000--Sobic001G259600 Sobic006G165100 Sobic006G165100 Sobic005G037000--Sobic006G165100 Sobic001G077400--Sobic004G280900 Sobic001G077400--Sobic005G037000 Sobic001G077400--Sobic001G209800 Sobic001G077400--Sobic001G441100 Sobic001G077400--Sobic009G217600 Sobic001G077400--Sobic001G035000 Sobic002G036100 Sobic002G036100 Sobic001G077400--Sobic002G036100 Sobic001G077400--Sobic006G165100 Sobic001G077400--Sobic001G341600 Sobic006G273800--Sobic009G217500 Sobic010G023200 Sobic010G023200 Sobic006G273800--Sobic010G023200 Sobic007G077100 Sobic007G077100 Sobic006G273800--Sobic007G077100 Sobic003G341100 Sobic003G341100 Sobic006G273800--Sobic003G341100 Sobic001G370600 Sobic001G370600 Sobic006G273800--Sobic001G370600 Sobic003G416500 Sobic003G416500 Sobic006G273800--Sobic003G416500 Sobic001G064900 Sobic001G064900 Sobic006G273800--Sobic001G064900 Sobic006G273800--Sobic001G035000 Sobic006G273800--Sobic010G234000 Sobic009G217600--Sobic001G441100 Sobic009G217600--Sobic001G341600 Sobic009G217600--Sobic001G077400 Sobic009G217600--Sobic001G035000 Sobic009G217600--Sobic004G280900 Sobic009G217600--Sobic001G209800 Sobic009G217600--Sobic005G037000 Sobic003G353800 Sobic003G353800 Sobic009G217600--Sobic003G353800 Sobic002G278500 Sobic002G278500 Sobic009G217600--Sobic002G278500 Sobic001G441100--Sobic001G035000 Sobic001G441100--Sobic009G217600 Sobic001G441100--Sobic001G077400 Sobic001G441100--Sobic001G341600 Sobic001G441100--Sobic005G037000 Sobic001G441100--Sobic004G280900 Sobic001G441100--Sobic002G278500 Sobic001G441100--Sobic001G209800 Sobic002G140300 Sobic002G140300 Sobic001G441100--Sobic002G140300 Sobic007G126300--Sobic005G037000 Sobic007G126300--Sobic001G077400 Sobic007G126300--Sobic001G441100 Sobic007G126300--Sobic004G280900 Sobic007G126300--Sobic001G035000 Sobic007G126300--Sobic006G165100 Sobic007G126300--Sobic009G217600 Sobic007G126300--Sobic001G341600 Sobic007G126300--Sobic001G209800
Octagon: transcription factors


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