Gene annotation
Transcriptome id Sobic.006G273800.1
Synonym Sb06g033520
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
CAF1 family ribonuclease containing protein, putative, expressed
UniProt C5YAP8
Pfam PF04857
Panther DB PTHR10797 PTHR10797:SF3
NCBI CDD KOG0304; mRNA deadenylase subunit
KEGG Orthology K12581; CNOT7_8, CAF1, CCR4-NOT transcription complex subunit 7/8
Gene Ontology GO:0005634; nucleus


Orthologs (automatic annotation)
TAIR AT5G22250 : Polynucleotidyl transferase, ribonuclease H-like superfamily protein
RAP-DB (Rice) LOC_Os04g58810.1 : CAF1 family ribonuclease containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a009238 , Zm00025a057426
Brachypodium KQJ85373
Barley HORVU2Hr1G123480.1
Wheat -
Populus -


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cDNA sequences
Sobic.006G273800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G217500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@STE_MEKK_ste11_MAP3K.18 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
2 Sobic.010G023200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.007G077100 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
4 Sobic.003G341100 WRKY24, expressed K13424: WRKY transcription factor 33
5 Sobic.001G370600 expressed protein -
6 Sobic.003G416500 SRC2 protein, putative, expressed -
7 Sobic.001G064900 syntaxin, putative, expressed K08486: syntaxin 1B/2/3
8 Sobic.001G035000 ZOS3-22 - C2H2 zinc finger protein, expressed -
9 Sobic.010G234000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@EF hand family protein, putative, expressed -
10 Sobic.004G032300 OsSGL(Ortholog in rice:Wang et al. (2016))(PubMedID : 31659876)@DUF1645 domain containing protein, putative, expressed -
11 Sobic.001G192800 AAA-type ATPase family protein, putative, expressed -
12 Sobic.001G095700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@helix-loop-helix DNA-binding domain containing protein, expressed -
13 Sobic.001G341600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@tyrosine protein kinase domain containing protein, putative, expressed -
14 Sobic.009G217600 STE_MEKK_ste11_MAP3K.19 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
15 Sobic.001G489500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
16 Sobic.007G145700 expressed protein -
17 Sobic.010G102000 U-box protein CMPG1, putative, expressed -
18 Sobic.001G209800 harpin-induced protein 1 domain containing protein, expressed -
19 Sobic.009G044400 1-aminocyclopropane-1-carboxylate oxidase, putative, expressed K05933: aminocyclopropanecarboxylate oxidase
20 Sobic.003G353800 avr9/Cf-9 rapidly elicited protein, putative, expressed -


Gene co-expression network
sample Sobic006G273800 Sobic006G273800 Sobic009G217500 Sobic009G217500 Sobic006G273800--Sobic009G217500 Sobic010G023200 Sobic010G023200 Sobic006G273800--Sobic010G023200 Sobic007G077100 Sobic007G077100 Sobic006G273800--Sobic007G077100 Sobic003G341100 Sobic003G341100 Sobic006G273800--Sobic003G341100 Sobic001G370600 Sobic001G370600 Sobic006G273800--Sobic001G370600 Sobic003G416500 Sobic003G416500 Sobic006G273800--Sobic003G416500 Sobic001G064900 Sobic001G064900 Sobic006G273800--Sobic001G064900 Sobic001G035000 Sobic001G035000 Sobic006G273800--Sobic001G035000 Sobic010G234000 Sobic010G234000 Sobic006G273800--Sobic010G234000 Sobic009G217500--Sobic006G273800 Sobic009G217500--Sobic007G077100 Sobic009G217500--Sobic003G341100 Sobic009G217500--Sobic010G023200 Sobic010G102000 Sobic010G102000 Sobic009G217500--Sobic010G102000 Sobic009G217500--Sobic003G416500 Sobic001G341600 Sobic001G341600 Sobic009G217500--Sobic001G341600 Sobic009G217500--Sobic001G035000 Sobic009G217500--Sobic001G064900 Sobic010G023200--Sobic007G077100 Sobic010G023200--Sobic009G217500 Sobic010G023200--Sobic003G416500 Sobic010G023200--Sobic006G273800 Sobic006G259000 Sobic006G259000 Sobic010G023200--Sobic006G259000 Sobic010G071000 Sobic010G071000 Sobic010G023200--Sobic010G071000 Sobic010G023200--Sobic003G341100 Sobic010G023200--Sobic001G064900 Sobic001G489500 Sobic001G489500 Sobic010G023200--Sobic001G489500 Sobic007G077100--Sobic010G023200 Sobic007G077100--Sobic009G217500 Sobic007G077100--Sobic006G273800 Sobic007G077100--Sobic003G416500 Sobic007G077100--Sobic003G341100 Sobic007G077100--Sobic006G259000 Sobic007G077200 Sobic007G077200 Sobic007G077100--Sobic007G077200 Sobic007G077100--Sobic010G071000 Sobic007G077100--Sobic001G489500 Sobic003G341100--Sobic009G217500 Sobic007G145700 Sobic007G145700 Sobic003G341100--Sobic007G145700 Sobic009G044400 Sobic009G044400 Sobic003G341100--Sobic009G044400 Sobic003G341100--Sobic007G077100 Sobic003G341100--Sobic010G102000 Sobic003G341100--Sobic001G341600 Sobic003G341100--Sobic006G273800 Sobic003G341100--Sobic010G023200 Sobic002G118600 Sobic002G118600 Sobic003G341100--Sobic002G118600 Sobic001G370600--Sobic006G273800 Sobic002G197600 Sobic002G197600 Sobic001G370600--Sobic002G197600 Sobic007G051800 Sobic007G051800 Sobic001G370600--Sobic007G051800 Sobic002G367900 Sobic002G367900 Sobic001G370600--Sobic002G367900 Sobic003G425200 Sobic003G425200 Sobic001G370600--Sobic003G425200 Sobic006G210300 Sobic006G210300 Sobic001G370600--Sobic006G210300 Sobic001G370600--Sobic003G341100 Sobic007G011000 Sobic007G011000 Sobic001G370600--Sobic007G011000 Sobic007G201100 Sobic007G201100 Sobic001G370600--Sobic007G201100 Sobic003G416500--Sobic001G489500 Sobic003G416500--Sobic010G023200 Sobic003G416500--Sobic006G259000 Sobic003G416500--Sobic007G077100 Sobic003G416500--Sobic009G217500 Sobic003G416500--Sobic006G273800 Sobic009G120800 Sobic009G120800 Sobic003G416500--Sobic009G120800 Sobic002G323900 Sobic002G323900 Sobic003G416500--Sobic002G323900 Sobic010G105300 Sobic010G105300 Sobic003G416500--Sobic010G105300 Sobic001G064900--Sobic010G102000 Sobic001G064900--Sobic009G217500 Sobic001G064900--Sobic006G273800 Sobic001G064900--Sobic010G023200 Sobic006G257700 Sobic006G257700 Sobic001G064900--Sobic006G257700 Sobic001G064900--Sobic006G259000 Sobic001G064900--Sobic007G077100 Sobic001G095700 Sobic001G095700 Sobic001G064900--Sobic001G095700 Sobic001G064900--Sobic003G341100 Sobic001G441100 Sobic001G441100 Sobic001G035000--Sobic001G441100 Sobic001G077400 Sobic001G077400 Sobic001G035000--Sobic001G077400 Sobic009G217600 Sobic009G217600 Sobic001G035000--Sobic009G217600 Sobic005G037000 Sobic005G037000 Sobic001G035000--Sobic005G037000 Sobic001G035000--Sobic001G341600 Sobic001G209800 Sobic001G209800 Sobic001G035000--Sobic001G209800 Sobic007G122500 Sobic007G122500 Sobic001G035000--Sobic007G122500 Sobic007G126300 Sobic007G126300 Sobic001G035000--Sobic007G126300 Sobic004G280900 Sobic004G280900 Sobic001G035000--Sobic004G280900 Sobic004G032300 Sobic004G032300 Sobic010G234000--Sobic004G032300 Sobic010G234000--Sobic006G273800 Sobic010G234000--Sobic010G023200 Sobic008G042900 Sobic008G042900 Sobic010G234000--Sobic008G042900 Sobic010G234000--Sobic007G077200 Sobic010G234000--Sobic009G217500 Sobic010G234000--Sobic003G416500 Sobic010G234000--Sobic007G122500 Sobic010G234000--Sobic005G037000
Octagon: transcription factors


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