Gene annotation
Transcriptome id Sobic.001G095700.1
Synonym BHLH92, Sb01g008570
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
helix-loop-helix DNA-binding domain containing protein, expressed
UniProt C5X197
Pfam PF00010
Panther DB PTHR12565 PTHR12565:SF164
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G43650 : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os03g53020.1 : helix-loop-helix DNA-binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a008081
Brachypodium -
Barley -
Wheat TraesCS5D02G390700 , TraesCS5D02G390700 , TraesCS5D02G390700 , TraesCS5A02G380900 , TraesCS5A02G380900 , TraesCS5B02G384500 , TraesCS5A02G380900
Populus -


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cDNA sequences
Sobic.001G095700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G065900 CML (Calmodulin like protein) with WRKY-binding domain(PubMedID : 31721651)@transcription factor(PubMedID : 30367619)@WRKY71, expressed -
2 Sobic.003G268900 STE_MEKK_ste11_MAP3K.6 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
3 Sobic.002G294600 aspartic proteinase nepenthesin precursor, putative, expressed -
4 Sobic.002G367900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aspartic proteinase nepenthesin precursor, putative, expressed -
5 Sobic.007G145700 expressed protein -
6 Sobic.006G273800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CAF1 family ribonuclease containing protein, putative, expressed K12581: CNOT7_8, CAF1, CCR4-NOT transcription complex subunit 7/8
7 Sobic.007G051800 down-regulated TF in developmental senescence(PubMedID : 27586543)@basic helix-loop-helix family protein, putative, expressed -
8 Sobic.001G064900 syntaxin, putative, expressed K08486: syntaxin 1B/2/3
9 Sobic.003G341100 WRKY24, expressed K13424: WRKY transcription factor 33
10 Sobic.010G102000 U-box protein CMPG1, putative, expressed -
11 Sobic.009G217500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@STE_MEKK_ste11_MAP3K.18 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
12 Sobic.007G143400 tetraspanin family protein, putative, expressed -
13 Sobic.002G207300 tetraspanin family protein, putative, expressed -
14 Sobic.009G010400 zinc finger, RING-type, putative, expressed -
15 Sobic.001G462800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed -
16 Sobic.007G201100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@oxysterol-binding protein, putative, expressed -
17 Sobic.007G077100 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
18 Sobic.002G217100 tyrosine protein kinase domain containing protein, putative, expressed -
19 Sobic.002G341900 - -
20 Sobic.006G257700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@heavy metal transport/detoxification protein, putative, expressed -


Gene co-expression network
sample Sobic001G095700 Sobic001G095700 Sobic004G065900 Sobic004G065900 Sobic001G095700--Sobic004G065900 Sobic003G268900 Sobic003G268900 Sobic001G095700--Sobic003G268900 Sobic002G294600 Sobic002G294600 Sobic001G095700--Sobic002G294600 Sobic002G367900 Sobic002G367900 Sobic001G095700--Sobic002G367900 Sobic007G145700 Sobic007G145700 Sobic001G095700--Sobic007G145700 Sobic006G273800 Sobic006G273800 Sobic001G095700--Sobic006G273800 Sobic007G051800 Sobic007G051800 Sobic001G095700--Sobic007G051800 Sobic001G064900 Sobic001G064900 Sobic001G095700--Sobic001G064900 Sobic003G341100 Sobic003G341100 Sobic001G095700--Sobic003G341100 Sobic002G207300 Sobic002G207300 Sobic004G065900--Sobic002G207300 Sobic004G065900--Sobic001G095700 Sobic004G065900--Sobic002G367900 Sobic001G118900 Sobic001G118900 Sobic004G065900--Sobic001G118900 Sobic004G065900--Sobic002G294600 Sobic006G146500 Sobic006G146500 Sobic004G065900--Sobic006G146500 Sobic007G201100 Sobic007G201100 Sobic004G065900--Sobic007G201100 Sobic004G065900--Sobic007G145700 Sobic009G010400 Sobic009G010400 Sobic004G065900--Sobic009G010400 Sobic004G244100 Sobic004G244100 Sobic003G268900--Sobic004G244100 Sobic003G268900--Sobic001G095700 Sobic003G268900--Sobic002G367900 Sobic002G217100 Sobic002G217100 Sobic003G268900--Sobic002G217100 Sobic006G210300 Sobic006G210300 Sobic003G268900--Sobic006G210300 Sobic002G197600 Sobic002G197600 Sobic003G268900--Sobic002G197600 Sobic004G244300 Sobic004G244300 Sobic003G268900--Sobic004G244300 Sobic009G167000 Sobic009G167000 Sobic003G268900--Sobic009G167000 Sobic004G281200 Sobic004G281200 Sobic003G268900--Sobic004G281200 Sobic002G294600--Sobic007G145700 Sobic001G462800 Sobic001G462800 Sobic002G294600--Sobic001G462800 Sobic002G294600--Sobic001G095700 Sobic002G294600--Sobic002G367900 Sobic002G294600--Sobic004G065900 Sobic002G294600--Sobic002G217100 Sobic002G294600--Sobic003G341100 Sobic002G294600--Sobic006G146500 Sobic002G294600--Sobic001G118900 Sobic002G367900--Sobic002G207300 Sobic002G367900--Sobic004G065900 Sobic002G367900--Sobic003G268900 Sobic002G367900--Sobic001G095700 Sobic002G367900--Sobic001G462800 Sobic002G367900--Sobic002G294600 Sobic002G367900--Sobic002G197600 Sobic002G367900--Sobic006G210300 Sobic002G367900--Sobic004G244100 Sobic007G145700--Sobic003G341100 Sobic007G145700--Sobic002G294600 Sobic010G102000 Sobic010G102000 Sobic007G145700--Sobic010G102000 Sobic007G145700--Sobic001G462800 Sobic007G145700--Sobic006G146500 Sobic009G217500 Sobic009G217500 Sobic007G145700--Sobic009G217500 Sobic007G145700--Sobic001G095700 Sobic009G044400 Sobic009G044400 Sobic007G145700--Sobic009G044400 Sobic007G145700--Sobic006G273800 Sobic006G273800--Sobic009G217500 Sobic010G023200 Sobic010G023200 Sobic006G273800--Sobic010G023200 Sobic007G077100 Sobic007G077100 Sobic006G273800--Sobic007G077100 Sobic006G273800--Sobic003G341100 Sobic001G370600 Sobic001G370600 Sobic006G273800--Sobic001G370600 Sobic003G416500 Sobic003G416500 Sobic006G273800--Sobic003G416500 Sobic006G273800--Sobic001G064900 Sobic001G035000 Sobic001G035000 Sobic006G273800--Sobic001G035000 Sobic010G234000 Sobic010G234000 Sobic006G273800--Sobic010G234000 Sobic007G051800--Sobic001G095700 Sobic007G051800--Sobic001G370600 Sobic007G051800--Sobic001G462800 Sobic007G051800--Sobic002G367900 Sobic007G051800--Sobic003G268900 Sobic007G051800--Sobic006G273800 Sobic007G051800--Sobic002G197600 Sobic007G051800--Sobic006G210300 Sobic007G051800--Sobic004G065900 Sobic001G064900--Sobic010G102000 Sobic001G064900--Sobic009G217500 Sobic001G064900--Sobic006G273800 Sobic001G064900--Sobic010G023200 Sobic006G257700 Sobic006G257700 Sobic001G064900--Sobic006G257700 Sobic006G259000 Sobic006G259000 Sobic001G064900--Sobic006G259000 Sobic001G064900--Sobic007G077100 Sobic001G064900--Sobic001G095700 Sobic001G064900--Sobic003G341100 Sobic003G341100--Sobic009G217500 Sobic003G341100--Sobic007G145700 Sobic003G341100--Sobic009G044400 Sobic003G341100--Sobic007G077100 Sobic003G341100--Sobic010G102000 Sobic001G341600 Sobic001G341600 Sobic003G341100--Sobic001G341600 Sobic003G341100--Sobic006G273800 Sobic003G341100--Sobic010G023200 Sobic002G118600 Sobic002G118600 Sobic003G341100--Sobic002G118600
Octagon: transcription factors


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