Gene annotation
Transcriptome id Sobic.007G051800.1
Synonym Sb07g004190
Functional annotation down-regulated TF in developmental senescence (PubMedID : 27586543)
basic helix-loop-helix family protein, putative, expressed
UniProt C5YHE6
Pfam PF00010
Panther DB PTHR11514 PTHR11514:SF33
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G57150 : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os04g23550.1 : basic helix-loop-helix family protein, putative, expressed
MaizeGDB (Corn) Zm00025a055097 , Zm00025a011931
Brachypodium KQJ82035 , KQJ82034
Barley HORVU2Hr1G066100.8 , HORVU2Hr1G066100.1 , HORVU2Hr1G066100.3 , HORVU2Hr1G066100.2 , HORVU2Hr1G066100.4 , HORVU2Hr1G066100.7 , HORVU2Hr1G066100.6
Wheat TraesCS2A02G271700 , TraesCS2D02G270300 , TraesCS2B02G289900
Populus -


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cDNA sequences
Sobic.007G051800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G095700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@helix-loop-helix DNA-binding domain containing protein, expressed -
2 Sobic.001G370600 expressed protein -
3 Sobic.001G462800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed -
4 Sobic.002G367900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aspartic proteinase nepenthesin precursor, putative, expressed -
5 Sobic.003G268900 STE_MEKK_ste11_MAP3K.6 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
6 Sobic.006G273800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CAF1 family ribonuclease containing protein, putative, expressed K12581: CNOT7_8, CAF1, CCR4-NOT transcription complex subunit 7/8
7 Sobic.002G197600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@TKL_IRAK_DUF26-lg.2 - DUF26 kinases have homology to DUF26 containing loci, expressed -
8 Sobic.006G210300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
9 Sobic.004G065900 CML (Calmodulin like protein) with WRKY-binding domain(PubMedID : 31721651)@transcription factor(PubMedID : 30367619)@WRKY71, expressed -
10 Sobic.008G036000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
11 Sobic.002G217100 tyrosine protein kinase domain containing protein, putative, expressed -
12 Sobic.002G294600 aspartic proteinase nepenthesin precursor, putative, expressed -
13 Sobic.001G081600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed -
14 Sobic.004G281200 chitin-inducible gibberellin-responsive protein 2, putative, expressed -
15 Sobic.004G244100 glycosyl transferase 8 domain containing protein, putative, expressed -
16 Sobic.002G021300 bZIP transcription factor domain containing protein, expressed -
17 Sobic.003G158600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@abscisic stress-ripening, putative, expressed -
18 Sobic.002G207300 tetraspanin family protein, putative, expressed -
19 Sobic.010G272000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@leucine zipper protein-like, putative, expressed -
20 Sobic.007G145700 expressed protein -


Gene co-expression network
sample Sobic007G051800 Sobic007G051800 Sobic001G095700 Sobic001G095700 Sobic007G051800--Sobic001G095700 Sobic001G370600 Sobic001G370600 Sobic007G051800--Sobic001G370600 Sobic001G462800 Sobic001G462800 Sobic007G051800--Sobic001G462800 Sobic002G367900 Sobic002G367900 Sobic007G051800--Sobic002G367900 Sobic003G268900 Sobic003G268900 Sobic007G051800--Sobic003G268900 Sobic006G273800 Sobic006G273800 Sobic007G051800--Sobic006G273800 Sobic002G197600 Sobic002G197600 Sobic007G051800--Sobic002G197600 Sobic006G210300 Sobic006G210300 Sobic007G051800--Sobic006G210300 Sobic004G065900 Sobic004G065900 Sobic007G051800--Sobic004G065900 Sobic001G095700--Sobic004G065900 Sobic001G095700--Sobic003G268900 Sobic002G294600 Sobic002G294600 Sobic001G095700--Sobic002G294600 Sobic001G095700--Sobic002G367900 Sobic007G145700 Sobic007G145700 Sobic001G095700--Sobic007G145700 Sobic001G095700--Sobic006G273800 Sobic001G095700--Sobic007G051800 Sobic001G064900 Sobic001G064900 Sobic001G095700--Sobic001G064900 Sobic003G341100 Sobic003G341100 Sobic001G095700--Sobic003G341100 Sobic001G370600--Sobic006G273800 Sobic001G370600--Sobic002G197600 Sobic001G370600--Sobic007G051800 Sobic001G370600--Sobic002G367900 Sobic003G425200 Sobic003G425200 Sobic001G370600--Sobic003G425200 Sobic001G370600--Sobic006G210300 Sobic001G370600--Sobic003G341100 Sobic007G011000 Sobic007G011000 Sobic001G370600--Sobic007G011000 Sobic007G201100 Sobic007G201100 Sobic001G370600--Sobic007G201100 Sobic001G081600 Sobic001G081600 Sobic001G462800--Sobic001G081600 Sobic002G217100 Sobic002G217100 Sobic001G462800--Sobic002G217100 Sobic001G462800--Sobic002G294600 Sobic001G462800--Sobic002G197600 Sobic002G344700 Sobic002G344700 Sobic001G462800--Sobic002G344700 Sobic001G462800--Sobic002G367900 Sobic001G462800--Sobic006G210300 Sobic001G462800--Sobic007G145700 Sobic004G281200 Sobic004G281200 Sobic001G462800--Sobic004G281200 Sobic002G207300 Sobic002G207300 Sobic002G367900--Sobic002G207300 Sobic002G367900--Sobic004G065900 Sobic002G367900--Sobic003G268900 Sobic002G367900--Sobic001G095700 Sobic002G367900--Sobic001G462800 Sobic002G367900--Sobic002G294600 Sobic002G367900--Sobic002G197600 Sobic002G367900--Sobic006G210300 Sobic004G244100 Sobic004G244100 Sobic002G367900--Sobic004G244100 Sobic003G268900--Sobic004G244100 Sobic003G268900--Sobic001G095700 Sobic003G268900--Sobic002G367900 Sobic003G268900--Sobic002G217100 Sobic003G268900--Sobic006G210300 Sobic003G268900--Sobic002G197600 Sobic004G244300 Sobic004G244300 Sobic003G268900--Sobic004G244300 Sobic009G167000 Sobic009G167000 Sobic003G268900--Sobic009G167000 Sobic003G268900--Sobic004G281200 Sobic009G217500 Sobic009G217500 Sobic006G273800--Sobic009G217500 Sobic010G023200 Sobic010G023200 Sobic006G273800--Sobic010G023200 Sobic007G077100 Sobic007G077100 Sobic006G273800--Sobic007G077100 Sobic006G273800--Sobic003G341100 Sobic006G273800--Sobic001G370600 Sobic003G416500 Sobic003G416500 Sobic006G273800--Sobic003G416500 Sobic006G273800--Sobic001G064900 Sobic001G035000 Sobic001G035000 Sobic006G273800--Sobic001G035000 Sobic010G234000 Sobic010G234000 Sobic006G273800--Sobic010G234000 Sobic002G197600--Sobic001G081600 Sobic002G197600--Sobic002G217100 Sobic002G197600--Sobic001G462800 Sobic002G197600--Sobic004G281200 Sobic002G197600--Sobic006G210300 Sobic002G197600--Sobic002G367900 Sobic008G036000 Sobic008G036000 Sobic002G197600--Sobic008G036000 Sobic002G197600--Sobic004G244100 Sobic004G176900 Sobic004G176900 Sobic002G197600--Sobic004G176900 Sobic006G210300--Sobic002G217100 Sobic006G210300--Sobic004G281200 Sobic006G210300--Sobic001G081600 Sobic006G210300--Sobic002G197600 Sobic006G210300--Sobic001G462800 Sobic006G210300--Sobic002G367900 Sobic010G016500 Sobic010G016500 Sobic006G210300--Sobic010G016500 Sobic006G210300--Sobic004G244100 Sobic006G184400 Sobic006G184400 Sobic006G210300--Sobic006G184400 Sobic004G065900--Sobic002G207300 Sobic004G065900--Sobic001G095700 Sobic004G065900--Sobic002G367900 Sobic001G118900 Sobic001G118900 Sobic004G065900--Sobic001G118900 Sobic004G065900--Sobic002G294600 Sobic006G146500 Sobic006G146500 Sobic004G065900--Sobic006G146500 Sobic004G065900--Sobic007G201100 Sobic004G065900--Sobic007G145700 Sobic009G010400 Sobic009G010400 Sobic004G065900--Sobic009G010400
Octagon: transcription factors


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