Gene annotation
Transcriptome id Sobic.001G064900.1
Synonym Sb01g005900, SYP121, PEN1, SYR1, ATSYR1, ATSYP121, AT-SYR1
Functional annotation syntaxin, putative, expressed
UniProt C5WY64
Pfam PF05739 PF00804
Panther DB PTHR19957 PTHR19957:SF69
NCBI CDD KOG0810; SNARE protein Syntaxin 1 and related proteins
KEGG Orthology K08486; syntaxin 1B/2/3
Gene Ontology GO:0005515; protein binding GO:0016020membrane


Orthologs (automatic annotation)
TAIR AT3G11820 : syntaxin of plants 121
RAP-DB (Rice) LOC_Os03g57310.1 : syntaxin, putative, expressed
MaizeGDB (Corn) Zm00025a016621 , Zm00025a008481 , Zm00025a016623
Brachypodium KQK12847 , KQJ94003 , KQJ94002
Barley HORVU5Hr1G103620.1 , HORVU5Hr1G103620.3 , HORVU5Hr1G103620.2 , HORVU5Hr1G103590.3 , HORVU5Hr1G103590.2 , HORVU5Hr1G103590.1
Wheat TraesCS7D02G354500 , TraesCS7A02G368400 , TraesCS7B02G260100
Populus -


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cDNA sequences
Sobic.001G064900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G102000 U-box protein CMPG1, putative, expressed -
2 Sobic.009G217500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@STE_MEKK_ste11_MAP3K.18 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
3 Sobic.006G273800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CAF1 family ribonuclease containing protein, putative, expressed K12581: CNOT7_8, CAF1, CCR4-NOT transcription complex subunit 7/8
4 Sobic.010G023200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.006G257700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@heavy metal transport/detoxification protein, putative, expressed -
6 Sobic.006G259000 AP2 domain containing protein, expressed K09286: EREBP-like factor
7 Sobic.007G077100 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
8 Sobic.001G095700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@helix-loop-helix DNA-binding domain containing protein, expressed -
9 Sobic.003G341100 WRKY24, expressed K13424: WRKY transcription factor 33
10 Sobic.007G145700 expressed protein -
11 Sobic.009G010400 zinc finger, RING-type, putative, expressed -
12 Sobic.003G416500 SRC2 protein, putative, expressed -
13 Sobic.002G341900 - -
14 Sobic.007G201100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@oxysterol-binding protein, putative, expressed -
15 Sobic.001G489500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
16 Sobic.010G105300 hydrolase, NUDIX family, domain containing protein, expressed K07766: diphosphoinositol-polyphosphate diphosphatase
17 Sobic.004G305000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger, C3HC4 type domain containing protein, expressed K10664: E3 ubiquitin-protein ligase ATL6/9/15/31/42/55
18 Sobic.006G146500 NB-ARC/LRR disease resistance protein, putative, expressed K13459: disease resistance protein RPS2
19 Sobic.004G065900 CML (Calmodulin like protein) with WRKY-binding domain(PubMedID : 31721651)@transcription factor(PubMedID : 30367619)@WRKY71, expressed -
20 Sobic.007G090300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic001G064900 Sobic001G064900 Sobic010G102000 Sobic010G102000 Sobic001G064900--Sobic010G102000 Sobic009G217500 Sobic009G217500 Sobic001G064900--Sobic009G217500 Sobic006G273800 Sobic006G273800 Sobic001G064900--Sobic006G273800 Sobic010G023200 Sobic010G023200 Sobic001G064900--Sobic010G023200 Sobic006G257700 Sobic006G257700 Sobic001G064900--Sobic006G257700 Sobic006G259000 Sobic006G259000 Sobic001G064900--Sobic006G259000 Sobic007G077100 Sobic007G077100 Sobic001G064900--Sobic007G077100 Sobic001G095700 Sobic001G095700 Sobic001G064900--Sobic001G095700 Sobic003G341100 Sobic003G341100 Sobic001G064900--Sobic003G341100 Sobic010G102000--Sobic009G217500 Sobic010G105300 Sobic010G105300 Sobic010G102000--Sobic010G105300 Sobic010G102000--Sobic003G341100 Sobic002G232800 Sobic002G232800 Sobic010G102000--Sobic002G232800 Sobic010G102000--Sobic001G064900 Sobic007G145700 Sobic007G145700 Sobic010G102000--Sobic007G145700 Sobic010G102000--Sobic010G023200 Sobic010G102000--Sobic007G077100 Sobic010G102000--Sobic006G273800 Sobic009G217500--Sobic006G273800 Sobic009G217500--Sobic007G077100 Sobic009G217500--Sobic003G341100 Sobic009G217500--Sobic010G023200 Sobic009G217500--Sobic010G102000 Sobic003G416500 Sobic003G416500 Sobic009G217500--Sobic003G416500 Sobic001G341600 Sobic001G341600 Sobic009G217500--Sobic001G341600 Sobic001G035000 Sobic001G035000 Sobic009G217500--Sobic001G035000 Sobic009G217500--Sobic001G064900 Sobic006G273800--Sobic009G217500 Sobic006G273800--Sobic010G023200 Sobic006G273800--Sobic007G077100 Sobic006G273800--Sobic003G341100 Sobic001G370600 Sobic001G370600 Sobic006G273800--Sobic001G370600 Sobic006G273800--Sobic003G416500 Sobic006G273800--Sobic001G064900 Sobic006G273800--Sobic001G035000 Sobic010G234000 Sobic010G234000 Sobic006G273800--Sobic010G234000 Sobic010G023200--Sobic007G077100 Sobic010G023200--Sobic009G217500 Sobic010G023200--Sobic003G416500 Sobic010G023200--Sobic006G273800 Sobic010G023200--Sobic006G259000 Sobic010G071000 Sobic010G071000 Sobic010G023200--Sobic010G071000 Sobic010G023200--Sobic003G341100 Sobic010G023200--Sobic001G064900 Sobic001G489500 Sobic001G489500 Sobic010G023200--Sobic001G489500 Sobic006G257700--Sobic001G064900 Sobic009G010400 Sobic009G010400 Sobic006G257700--Sobic009G010400 Sobic006G257700--Sobic010G102000 Sobic004G297600 Sobic004G297600 Sobic006G257700--Sobic004G297600 Sobic006G257700--Sobic001G095700 Sobic001G287600 Sobic001G287600 Sobic006G257700--Sobic001G287600 Sobic006G257700--Sobic010G023200 Sobic007G077300 Sobic007G077300 Sobic006G257700--Sobic007G077300 Sobic006G257700--Sobic006G259000 Sobic006G259000--Sobic003G416500 Sobic002G323900 Sobic002G323900 Sobic006G259000--Sobic002G323900 Sobic006G259000--Sobic010G023200 Sobic006G259000--Sobic007G077100 Sobic006G259000--Sobic010G105300 Sobic006G259000--Sobic001G064900 Sobic006G259000--Sobic001G489500 Sobic004G086800 Sobic004G086800 Sobic006G259000--Sobic004G086800 Sobic006G259000--Sobic009G217500 Sobic007G077100--Sobic010G023200 Sobic007G077100--Sobic009G217500 Sobic007G077100--Sobic006G273800 Sobic007G077100--Sobic003G416500 Sobic007G077100--Sobic003G341100 Sobic007G077100--Sobic006G259000 Sobic007G077200 Sobic007G077200 Sobic007G077100--Sobic007G077200 Sobic007G077100--Sobic010G071000 Sobic007G077100--Sobic001G489500 Sobic004G065900 Sobic004G065900 Sobic001G095700--Sobic004G065900 Sobic003G268900 Sobic003G268900 Sobic001G095700--Sobic003G268900 Sobic002G294600 Sobic002G294600 Sobic001G095700--Sobic002G294600 Sobic002G367900 Sobic002G367900 Sobic001G095700--Sobic002G367900 Sobic001G095700--Sobic007G145700 Sobic001G095700--Sobic006G273800 Sobic007G051800 Sobic007G051800 Sobic001G095700--Sobic007G051800 Sobic001G095700--Sobic001G064900 Sobic001G095700--Sobic003G341100 Sobic003G341100--Sobic009G217500 Sobic003G341100--Sobic007G145700 Sobic009G044400 Sobic009G044400 Sobic003G341100--Sobic009G044400 Sobic003G341100--Sobic007G077100 Sobic003G341100--Sobic010G102000 Sobic003G341100--Sobic001G341600 Sobic003G341100--Sobic006G273800 Sobic003G341100--Sobic010G023200 Sobic002G118600 Sobic002G118600 Sobic003G341100--Sobic002G118600
Octagon: transcription factors


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