Gene annotation
Transcriptome id Sobic.003G416500.1
Synonym Sb03g045000
Functional annotation SRC2 protein, putative, expressed
UniProt C5XH36
Pfam PF00168
Panther DB PTHR32246 PTHR32246:SF18
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G16510 : Calcium-dependent lipid-binding (CaLB domain) family protein
RAP-DB (Rice) LOC_Os01g70790.1 : SRC2 protein, putative, expressed
MaizeGDB (Corn) Zm00025a039200 , Zm00025a026142
Brachypodium KQK11389
Barley HORVU2Hr1G019990.1 , HORVU7Hr1G039400.1 , HORVU7Hr1G039400.2 , HORVU5Hr1G073150.2 , HORVU5Hr1G073150.1 , HORVU3Hr1G098160.4 , HORVU3Hr1G098160.3 , HORVU3Hr1G098160.2 , HORVU3Hr1G098160.1
Wheat TraesCS2B02G135100 , TraesCS3A02G454300 , TraesCS2D02G119700 , TraesCS3D02G446700 , TraesCS2A02G115400
Populus -


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cDNA sequences
Sobic.003G416500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G489500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
2 Sobic.010G023200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.006G259000 AP2 domain containing protein, expressed K09286: EREBP-like factor
4 Sobic.007G077100 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
5 Sobic.009G217500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@STE_MEKK_ste11_MAP3K.18 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
6 Sobic.006G273800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CAF1 family ribonuclease containing protein, putative, expressed K12581: CNOT7_8, CAF1, CCR4-NOT transcription complex subunit 7/8
7 Sobic.009G120800 OsCML15 - Calmodulin-related calcium sensor protein, expressed K13448: calcium-binding protein CML
8 Sobic.002G323900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PRAS-rich protein, putative, expressed -
9 Sobic.010G105300 hydrolase, NUDIX family, domain containing protein, expressed K07766: diphosphoinositol-polyphosphate diphosphatase
10 Sobic.004G086800 3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase
11 Sobic.003G353800 avr9/Cf-9 rapidly elicited protein, putative, expressed -
12 Sobic.009G217600 STE_MEKK_ste11_MAP3K.19 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
13 Sobic.001G192800 AAA-type ATPase family protein, putative, expressed -
14 Sobic.010G102000 U-box protein CMPG1, putative, expressed -
15 Sobic.010G234000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@EF hand family protein, putative, expressed -
16 Sobic.001G064900 syntaxin, putative, expressed K08486: syntaxin 1B/2/3
17 Sobic.001G196900 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@CPuORF40 - conserved peptide uORF-containing transcript, expressed K14488: SAUR family protein
18 Sobic.001G341600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@tyrosine protein kinase domain containing protein, putative, expressed -
19 Sobic.003G341100 WRKY24, expressed K13424: WRKY transcription factor 33
20 Sobic.004G032300 OsSGL(Ortholog in rice:Wang et al. (2016))(PubMedID : 31659876)@DUF1645 domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic003G416500 Sobic003G416500 Sobic001G489500 Sobic001G489500 Sobic003G416500--Sobic001G489500 Sobic010G023200 Sobic010G023200 Sobic003G416500--Sobic010G023200 Sobic006G259000 Sobic006G259000 Sobic003G416500--Sobic006G259000 Sobic007G077100 Sobic007G077100 Sobic003G416500--Sobic007G077100 Sobic009G217500 Sobic009G217500 Sobic003G416500--Sobic009G217500 Sobic006G273800 Sobic006G273800 Sobic003G416500--Sobic006G273800 Sobic009G120800 Sobic009G120800 Sobic003G416500--Sobic009G120800 Sobic002G323900 Sobic002G323900 Sobic003G416500--Sobic002G323900 Sobic010G105300 Sobic010G105300 Sobic003G416500--Sobic010G105300 Sobic001G489500--Sobic003G416500 Sobic001G489500--Sobic010G023200 Sobic001G489500--Sobic009G217500 Sobic001G489500--Sobic006G273800 Sobic001G489500--Sobic007G077100 Sobic001G489500--Sobic006G259000 Sobic001G489500--Sobic009G120800 Sobic003G353800 Sobic003G353800 Sobic001G489500--Sobic003G353800 Sobic001G489500--Sobic002G323900 Sobic010G023200--Sobic007G077100 Sobic010G023200--Sobic009G217500 Sobic010G023200--Sobic003G416500 Sobic010G023200--Sobic006G273800 Sobic010G023200--Sobic006G259000 Sobic010G071000 Sobic010G071000 Sobic010G023200--Sobic010G071000 Sobic003G341100 Sobic003G341100 Sobic010G023200--Sobic003G341100 Sobic001G064900 Sobic001G064900 Sobic010G023200--Sobic001G064900 Sobic010G023200--Sobic001G489500 Sobic006G259000--Sobic003G416500 Sobic006G259000--Sobic002G323900 Sobic006G259000--Sobic010G023200 Sobic006G259000--Sobic007G077100 Sobic006G259000--Sobic010G105300 Sobic006G259000--Sobic001G064900 Sobic006G259000--Sobic001G489500 Sobic004G086800 Sobic004G086800 Sobic006G259000--Sobic004G086800 Sobic006G259000--Sobic009G217500 Sobic007G077100--Sobic010G023200 Sobic007G077100--Sobic009G217500 Sobic007G077100--Sobic006G273800 Sobic007G077100--Sobic003G416500 Sobic007G077100--Sobic003G341100 Sobic007G077100--Sobic006G259000 Sobic007G077200 Sobic007G077200 Sobic007G077100--Sobic007G077200 Sobic007G077100--Sobic010G071000 Sobic007G077100--Sobic001G489500 Sobic009G217500--Sobic006G273800 Sobic009G217500--Sobic007G077100 Sobic009G217500--Sobic003G341100 Sobic009G217500--Sobic010G023200 Sobic010G102000 Sobic010G102000 Sobic009G217500--Sobic010G102000 Sobic009G217500--Sobic003G416500 Sobic001G341600 Sobic001G341600 Sobic009G217500--Sobic001G341600 Sobic001G035000 Sobic001G035000 Sobic009G217500--Sobic001G035000 Sobic009G217500--Sobic001G064900 Sobic006G273800--Sobic009G217500 Sobic006G273800--Sobic010G023200 Sobic006G273800--Sobic007G077100 Sobic006G273800--Sobic003G341100 Sobic001G370600 Sobic001G370600 Sobic006G273800--Sobic001G370600 Sobic006G273800--Sobic003G416500 Sobic006G273800--Sobic001G064900 Sobic006G273800--Sobic001G035000 Sobic010G234000 Sobic010G234000 Sobic006G273800--Sobic010G234000 Sobic004G319700 Sobic004G319700 Sobic009G120800--Sobic004G319700 Sobic001G441100 Sobic001G441100 Sobic009G120800--Sobic001G441100 Sobic009G217600 Sobic009G217600 Sobic009G120800--Sobic009G217600 Sobic009G120800--Sobic001G035000 Sobic009G120800--Sobic003G416500 Sobic005G037000 Sobic005G037000 Sobic009G120800--Sobic005G037000 Sobic007G122500 Sobic007G122500 Sobic009G120800--Sobic007G122500 Sobic009G120800--Sobic001G341600 Sobic004G280900 Sobic004G280900 Sobic009G120800--Sobic004G280900 Sobic002G323900--Sobic006G259000 Sobic002G323900--Sobic003G416500 Sobic002G323900--Sobic007G077100 Sobic002G323900--Sobic001G489500 Sobic002G323900--Sobic010G023200 Sobic002G323900--Sobic004G086800 Sobic002G269300 Sobic002G269300 Sobic002G323900--Sobic002G269300 Sobic002G323900--Sobic001G064900 Sobic009G010400 Sobic009G010400 Sobic002G323900--Sobic009G010400 Sobic010G105300--Sobic010G102000 Sobic010G105300--Sobic006G259000 Sobic010G105300--Sobic003G416500 Sobic010G105300--Sobic010G023200 Sobic010G105300--Sobic009G217500 Sobic010G105300--Sobic007G077100 Sobic010G105300--Sobic001G489500 Sobic010G105300--Sobic001G064900 Sobic002G341900 Sobic002G341900 Sobic010G105300--Sobic002G341900
Octagon: transcription factors


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