Gene annotation
Transcriptome id Sobic.006G257700.1
Synonym Sb06g032110
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
heavy metal transport/detoxification protein, putative, expressed
UniProt C5YA11
Pfam PF00403
Panther DB PTHR22814 PTHR22814:SF77
NCBI CDD KOG1603; Copper chaperone
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G01490 : Heavy metal transport/detoxification superfamily protein
RAP-DB (Rice) LOC_Os10g38870.1 : heavy metal-associated domain containing protein, expressed
MaizeGDB (Corn) Zm00025a000354 , Zm00025a009386 , Zm00025a057321
Brachypodium KQJ85181 , KQJ85182 , PNT62095
Barley HORVU2Hr1G118060.1 , HORVU2Hr1G118060.2 , HORVU2Hr1G118060.4 , HORVU2Hr1G117940.4 , HORVU2Hr1G117940.2 , HORVU2Hr1G117940.3 , HORVU2Hr1G117940.1 , HORVU2Hr1G118230.4 , HORVU2Hr1G118230.1 , HORVU2Hr1G118230.3 , HORVU2Hr1G118200.1 , HORVU2Hr1G118200.2 , HORVU2Hr1G118110.1 , HORVU2Hr1G118110.2 , HORVU2Hr1G118110.3 , HORVU2Hr1G118110.5 , HORVU2Hr1G118110.6 , HORVU2Hr1G118210.7 , HORVU2Hr1G118210.6 , HORVU2Hr1G118210.5 , HORVU2Hr1G118210.4 , HORVU2Hr1G118210.3 , HORVU2Hr1G118210.2 , HORVU2Hr1G118210.1 , HORVU2Hr1G118210.8 , HORVU4Hr1G089520.2 , HORVU4Hr1G089520.6 , HORVU4Hr1G089520.7 , HORVU4Hr1G089520.4 , HORVU4Hr1G089520.5 , HORVU4Hr1G089520.3 , HORVU4Hr1G089520.1
Wheat TraesCS2B02G569400 , TraesCS2A02G539500 , TraesCS2D02G540500 , TraesCS2B02G569200 , TraesCS2D02G540700 , TraesCS2D02G540300 , TraesCS4B02G393600 , TraesCS2D02G540000 , TraesCS2B02G569500 , TraesCSU02G020800 , TraesCS2D02G541200 , TraesCS2D02G541200 , TraesCS2A02G539000 , TraesCS2B02G569100 , TraesCS2D02G540600 , TraesCS2B02G569800
Populus -


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cDNA sequences
Sobic.006G257700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G064900 syntaxin, putative, expressed K08486: syntaxin 1B/2/3
2 Sobic.009G010400 zinc finger, RING-type, putative, expressed -
3 Sobic.010G102000 U-box protein CMPG1, putative, expressed -
4 Sobic.004G297600 triacylglycerol lipase like protein, putative, expressed -
5 Sobic.001G095700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@helix-loop-helix DNA-binding domain containing protein, expressed -
6 Sobic.001G287600 transcription factor MYC7E, putative, expressed K13422: transcription factor MYC2
7 Sobic.010G023200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.007G077300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
9 Sobic.006G259000 AP2 domain containing protein, expressed K09286: EREBP-like factor
10 Sobic.006G273800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CAF1 family ribonuclease containing protein, putative, expressed K12581: CNOT7_8, CAF1, CCR4-NOT transcription complex subunit 7/8
11 Sobic.009G217500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@STE_MEKK_ste11_MAP3K.18 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
12 Sobic.002G199500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CaM - probable calciumbinding protein CML45(PubMedID : 31721651)@EF hand family protein, putative, expressed K02183: calmodulin
13 Sobic.009G100500 WRKY53, expressed K13424: WRKY transcription factor 33
14 Sobic.004G297100 Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed K09286: EREBP-like factor
15 Sobic.002G341900 - -
16 Sobic.002G294600 aspartic proteinase nepenthesin precursor, putative, expressed -
17 Sobic.007G077100 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
18 Sobic.004G065900 CML (Calmodulin like protein) with WRKY-binding domain(PubMedID : 31721651)@transcription factor(PubMedID : 30367619)@WRKY71, expressed -
19 Sobic.003G341100 WRKY24, expressed K13424: WRKY transcription factor 33
20 Sobic.007G090300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic006G257700 Sobic006G257700 Sobic001G064900 Sobic001G064900 Sobic006G257700--Sobic001G064900 Sobic009G010400 Sobic009G010400 Sobic006G257700--Sobic009G010400 Sobic010G102000 Sobic010G102000 Sobic006G257700--Sobic010G102000 Sobic004G297600 Sobic004G297600 Sobic006G257700--Sobic004G297600 Sobic001G095700 Sobic001G095700 Sobic006G257700--Sobic001G095700 Sobic001G287600 Sobic001G287600 Sobic006G257700--Sobic001G287600 Sobic010G023200 Sobic010G023200 Sobic006G257700--Sobic010G023200 Sobic007G077300 Sobic007G077300 Sobic006G257700--Sobic007G077300 Sobic006G259000 Sobic006G259000 Sobic006G257700--Sobic006G259000 Sobic001G064900--Sobic010G102000 Sobic009G217500 Sobic009G217500 Sobic001G064900--Sobic009G217500 Sobic006G273800 Sobic006G273800 Sobic001G064900--Sobic006G273800 Sobic001G064900--Sobic010G023200 Sobic001G064900--Sobic006G257700 Sobic001G064900--Sobic006G259000 Sobic007G077100 Sobic007G077100 Sobic001G064900--Sobic007G077100 Sobic001G064900--Sobic001G095700 Sobic003G341100 Sobic003G341100 Sobic001G064900--Sobic003G341100 Sobic004G086800 Sobic004G086800 Sobic009G010400--Sobic004G086800 Sobic004G065900 Sobic004G065900 Sobic009G010400--Sobic004G065900 Sobic009G010400--Sobic001G064900 Sobic009G100500 Sobic009G100500 Sobic009G010400--Sobic009G100500 Sobic009G010400--Sobic006G257700 Sobic009G010400--Sobic006G259000 Sobic009G010400--Sobic001G095700 Sobic009G010400--Sobic010G102000 Sobic004G006500 Sobic004G006500 Sobic009G010400--Sobic004G006500 Sobic010G102000--Sobic009G217500 Sobic010G105300 Sobic010G105300 Sobic010G102000--Sobic010G105300 Sobic010G102000--Sobic003G341100 Sobic002G232800 Sobic002G232800 Sobic010G102000--Sobic002G232800 Sobic010G102000--Sobic001G064900 Sobic007G145700 Sobic007G145700 Sobic010G102000--Sobic007G145700 Sobic010G102000--Sobic010G023200 Sobic010G102000--Sobic007G077100 Sobic010G102000--Sobic006G273800 Sobic004G297600--Sobic006G257700 Sobic004G297600--Sobic010G102000 Sobic004G297600--Sobic009G010400 Sobic001G195100 Sobic001G195100 Sobic004G297600--Sobic001G195100 Sobic001G314800 Sobic001G314800 Sobic004G297600--Sobic001G314800 Sobic004G297600--Sobic010G105300 Sobic001G489500 Sobic001G489500 Sobic004G297600--Sobic001G489500 Sobic002G341900 Sobic002G341900 Sobic004G297600--Sobic002G341900 Sobic004G297600--Sobic001G064900 Sobic001G095700--Sobic004G065900 Sobic003G268900 Sobic003G268900 Sobic001G095700--Sobic003G268900 Sobic002G294600 Sobic002G294600 Sobic001G095700--Sobic002G294600 Sobic002G367900 Sobic002G367900 Sobic001G095700--Sobic002G367900 Sobic001G095700--Sobic007G145700 Sobic001G095700--Sobic006G273800 Sobic007G051800 Sobic007G051800 Sobic001G095700--Sobic007G051800 Sobic001G095700--Sobic001G064900 Sobic001G095700--Sobic003G341100 Sobic001G410100 Sobic001G410100 Sobic001G287600--Sobic001G410100 Sobic001G287600--Sobic004G065900 Sobic001G287600--Sobic004G086800 Sobic002G207300 Sobic002G207300 Sobic001G287600--Sobic002G207300 Sobic001G370600 Sobic001G370600 Sobic001G287600--Sobic001G370600 Sobic007G011000 Sobic007G011000 Sobic001G287600--Sobic007G011000 Sobic007G201100 Sobic007G201100 Sobic001G287600--Sobic007G201100 Sobic001G287600--Sobic009G010400 Sobic001G287600--Sobic010G102000 Sobic010G023200--Sobic007G077100 Sobic010G023200--Sobic009G217500 Sobic003G416500 Sobic003G416500 Sobic010G023200--Sobic003G416500 Sobic010G023200--Sobic006G273800 Sobic010G023200--Sobic006G259000 Sobic010G071000 Sobic010G071000 Sobic010G023200--Sobic010G071000 Sobic010G023200--Sobic003G341100 Sobic010G023200--Sobic001G064900 Sobic010G023200--Sobic001G489500 Sobic001G482600 Sobic001G482600 Sobic007G077300--Sobic001G482600 Sobic007G077300--Sobic006G257700 Sobic007G077300--Sobic001G064900 Sobic001G406300 Sobic001G406300 Sobic007G077300--Sobic001G406300 Sobic007G077300--Sobic004G297600 Sobic010G163150 Sobic010G163150 Sobic007G077300--Sobic010G163150 Sobic007G077300--Sobic006G273800 Sobic007G077300--Sobic001G095700 Sobic007G077300--Sobic010G102000 Sobic006G259000--Sobic003G416500 Sobic002G323900 Sobic002G323900 Sobic006G259000--Sobic002G323900 Sobic006G259000--Sobic010G023200 Sobic006G259000--Sobic007G077100 Sobic006G259000--Sobic010G105300 Sobic006G259000--Sobic001G064900 Sobic006G259000--Sobic001G489500 Sobic006G259000--Sobic004G086800 Sobic006G259000--Sobic009G217500
Octagon: transcription factors


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