Gene annotation
Transcriptome id Sobic.001G287600.1
Synonym ATMYC2, RD22BP1, JIN1, ZBF1, MYC2, Sb01g028230, JAI1
Functional annotation transcription factor MYC7E, putative, expressed
UniProt A0A1B6QMQ5
Pfam PF00010 PF14215
Panther DB PTHR11514 PTHR11514:SF43
NCBI CDD -
KEGG Orthology K13422; transcription factor MYC2
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G32640 : Basic helix-loop-helix (bHLH) DNA-binding family protein
RAP-DB (Rice) LOC_Os10g42430.1 : transcription factor MYC7E, putative, expressed
MaizeGDB (Corn) Zm00025a027847 , Zm00025a051819 , Zm00025a003465
Brachypodium KQK09396 , KQJ97935
Barley HORVU3Hr1G066390.1 , HORVU1Hr1G050560.1 , HORVU1Hr1G050560.2
Wheat TraesCS1A02G193200 , TraesCS3B02G288700
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G287600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G410100 CGMC_MAPKCGMC_2_ERK.2 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
2 Sobic.004G065900 CML (Calmodulin like protein) with WRKY-binding domain(PubMedID : 31721651)@transcription factor(PubMedID : 30367619)@WRKY71, expressed -
3 Sobic.004G086800 3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase
4 Sobic.002G207300 tetraspanin family protein, putative, expressed -
5 Sobic.001G370600 expressed protein -
6 Sobic.007G011000 synaptobrevin-related family protein, putative, expressed -
7 Sobic.007G201100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@oxysterol-binding protein, putative, expressed -
8 Sobic.009G010400 zinc finger, RING-type, putative, expressed -
9 Sobic.010G102000 U-box protein CMPG1, putative, expressed -
10 Sobic.001G064900 syntaxin, putative, expressed K08486: syntaxin 1B/2/3
11 Sobic.002G138700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@C2 domain containing protein, putative, expressed -
12 Sobic.007G145700 expressed protein -
13 Sobic.006G257700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@heavy metal transport/detoxification protein, putative, expressed -
14 Sobic.009G100500 WRKY53, expressed K13424: WRKY transcription factor 33
15 Sobic.002G294600 aspartic proteinase nepenthesin precursor, putative, expressed -
16 Sobic.006G259000 AP2 domain containing protein, expressed K09286: EREBP-like factor
17 Sobic.001G095700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@helix-loop-helix DNA-binding domain containing protein, expressed -
18 Sobic.003G352400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@C2 domain containing protein, putative, expressed -
19 Sobic.007G090300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.001G462800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed -


Gene co-expression network
sample Sobic001G287600 Sobic001G287600 Sobic001G410100 Sobic001G410100 Sobic001G287600--Sobic001G410100 Sobic004G065900 Sobic004G065900 Sobic001G287600--Sobic004G065900 Sobic004G086800 Sobic004G086800 Sobic001G287600--Sobic004G086800 Sobic002G207300 Sobic002G207300 Sobic001G287600--Sobic002G207300 Sobic001G370600 Sobic001G370600 Sobic001G287600--Sobic001G370600 Sobic007G011000 Sobic007G011000 Sobic001G287600--Sobic007G011000 Sobic007G201100 Sobic007G201100 Sobic001G287600--Sobic007G201100 Sobic009G010400 Sobic009G010400 Sobic001G287600--Sobic009G010400 Sobic010G102000 Sobic010G102000 Sobic001G287600--Sobic010G102000 Sobic001G410100--Sobic001G287600 Sobic001G410100--Sobic002G207300 Sobic003G341100 Sobic003G341100 Sobic001G410100--Sobic003G341100 Sobic001G410100--Sobic007G011000 Sobic009G100500 Sobic009G100500 Sobic001G410100--Sobic009G100500 Sobic002G118600 Sobic002G118600 Sobic001G410100--Sobic002G118600 Sobic009G044400 Sobic009G044400 Sobic001G410100--Sobic009G044400 Sobic007G212200 Sobic007G212200 Sobic001G410100--Sobic007G212200 Sobic001G410100--Sobic004G065900 Sobic004G065900--Sobic002G207300 Sobic001G095700 Sobic001G095700 Sobic004G065900--Sobic001G095700 Sobic002G367900 Sobic002G367900 Sobic004G065900--Sobic002G367900 Sobic001G118900 Sobic001G118900 Sobic004G065900--Sobic001G118900 Sobic002G294600 Sobic002G294600 Sobic004G065900--Sobic002G294600 Sobic006G146500 Sobic006G146500 Sobic004G065900--Sobic006G146500 Sobic004G065900--Sobic007G201100 Sobic007G145700 Sobic007G145700 Sobic004G065900--Sobic007G145700 Sobic004G065900--Sobic009G010400 Sobic004G086800--Sobic009G010400 Sobic003G416500 Sobic003G416500 Sobic004G086800--Sobic003G416500 Sobic006G259000 Sobic006G259000 Sobic004G086800--Sobic006G259000 Sobic004G086800--Sobic004G065900 Sobic002G323900 Sobic002G323900 Sobic004G086800--Sobic002G323900 Sobic001G489500 Sobic001G489500 Sobic004G086800--Sobic001G489500 Sobic004G086800--Sobic010G102000 Sobic002G138700 Sobic002G138700 Sobic004G086800--Sobic002G138700 Sobic004G086800--Sobic001G287600 Sobic002G207300--Sobic004G065900 Sobic002G207300--Sobic002G367900 Sobic002G207300--Sobic007G201100 Sobic002G207300--Sobic006G146500 Sobic002G207300--Sobic001G118900 Sobic003G425200 Sobic003G425200 Sobic002G207300--Sobic003G425200 Sobic002G207300--Sobic002G294600 Sobic002G207300--Sobic001G410100 Sobic002G207300--Sobic001G095700 Sobic006G273800 Sobic006G273800 Sobic001G370600--Sobic006G273800 Sobic002G197600 Sobic002G197600 Sobic001G370600--Sobic002G197600 Sobic007G051800 Sobic007G051800 Sobic001G370600--Sobic007G051800 Sobic001G370600--Sobic002G367900 Sobic001G370600--Sobic003G425200 Sobic006G210300 Sobic006G210300 Sobic001G370600--Sobic006G210300 Sobic001G370600--Sobic003G341100 Sobic001G370600--Sobic007G011000 Sobic001G370600--Sobic007G201100 Sobic007G011000--Sobic002G118600 Sobic002G330300 Sobic002G330300 Sobic007G011000--Sobic002G330300 Sobic010G228000 Sobic010G228000 Sobic007G011000--Sobic010G228000 Sobic007G011000--Sobic007G212200 Sobic004G280800 Sobic004G280800 Sobic007G011000--Sobic004G280800 Sobic007G011000--Sobic003G425200 Sobic002G354900 Sobic002G354900 Sobic007G011000--Sobic002G354900 Sobic010G041700 Sobic010G041700 Sobic007G011000--Sobic010G041700 Sobic004G025000 Sobic004G025000 Sobic007G011000--Sobic004G025000 Sobic007G201100--Sobic002G207300 Sobic007G201100--Sobic004G065900 Sobic007G201100--Sobic003G425200 Sobic007G201100--Sobic003G341100 Sobic007G077100 Sobic007G077100 Sobic007G201100--Sobic007G077100 Sobic009G217500 Sobic009G217500 Sobic007G201100--Sobic009G217500 Sobic007G201100--Sobic006G146500 Sobic007G201100--Sobic002G367900 Sobic007G201100--Sobic007G145700 Sobic009G010400--Sobic004G086800 Sobic009G010400--Sobic004G065900 Sobic001G064900 Sobic001G064900 Sobic009G010400--Sobic001G064900 Sobic009G010400--Sobic009G100500 Sobic006G257700 Sobic006G257700 Sobic009G010400--Sobic006G257700 Sobic009G010400--Sobic006G259000 Sobic009G010400--Sobic001G095700 Sobic009G010400--Sobic010G102000 Sobic004G006500 Sobic004G006500 Sobic009G010400--Sobic004G006500 Sobic010G102000--Sobic009G217500 Sobic010G105300 Sobic010G105300 Sobic010G102000--Sobic010G105300 Sobic010G102000--Sobic003G341100 Sobic002G232800 Sobic002G232800 Sobic010G102000--Sobic002G232800 Sobic010G102000--Sobic001G064900 Sobic010G102000--Sobic007G145700 Sobic010G023200 Sobic010G023200 Sobic010G102000--Sobic010G023200 Sobic010G102000--Sobic007G077100 Sobic010G102000--Sobic006G273800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.