Gene annotation
Transcriptome id Sobic.003G352400.1
Synonym Sb03g039490
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
C2 domain containing protein, putative, expressed
UniProt C5XPP7
Pfam PF00168
Panther DB PTHR10774 PTHR10774:SF58
NCBI CDD KOG1030; Predicted Ca2+-dependent phospholipid-binding protein
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G55470 : Calcium-dependent lipid-binding (CaLB domain) family protein
RAP-DB (Rice) LOC_Os01g62430.3 : C2 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a026900
Brachypodium PNT73165 , KQK10522 , KQK10521
Barley HORVU3Hr1G086230.8 , HORVU3Hr1G086230.9 , HORVU3Hr1G086230.1 , HORVU3Hr1G086230.2 , HORVU3Hr1G086230.3 , HORVU3Hr1G086230.4 , HORVU3Hr1G086230.5 , HORVU3Hr1G086230.6 , HORVU3Hr1G086230.7 , HORVU3Hr1G086220.7 , HORVU3Hr1G086220.6 , HORVU3Hr1G086220.5 , HORVU3Hr1G086220.4 , HORVU3Hr1G086220.3 , HORVU3Hr1G086220.2 , HORVU3Hr1G086220.1 , HORVU3Hr1G086220.9 , HORVU3Hr1G086220.8 , HORVU3Hr1G086230.12 , HORVU3Hr1G086230.13 , HORVU3Hr1G086230.10 , HORVU3Hr1G086230.11 , HORVU3Hr1G086230.14 , HORVU3Hr1G086230.15 , HORVU3Hr1G086240.1 , HORVU3Hr1G086240.3 , HORVU3Hr1G086240.2 , HORVU3Hr1G086240.5 , HORVU3Hr1G086240.4 , HORVU3Hr1G086240.7 , HORVU3Hr1G086240.6 , HORVU3Hr1G086240.9 , HORVU3Hr1G086240.8 , HORVU3Hr1G086240.11 , HORVU3Hr1G086240.10 , HORVU3Hr1G086220.11 , HORVU3Hr1G086220.10
Wheat TraesCS3D02G353700 , TraesCS5B02G117300 , TraesCS5B02G117300 , TraesCS3B02G392200 , TraesCS3D02G353800 , TraesCS3D02G353800 , TraesCS3D02G353800 , TraesCS3D02G353600 , TraesCS3B02G392300 , TraesCS3A02G359700 , TraesCS3B02G392500 , TraesCS3B02G392100 , TraesCS3D02G353900
Populus -


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cDNA sequences
Sobic.003G352400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G341100 WRKY24, expressed K13424: WRKY transcription factor 33
2 Sobic.002G118600 SNARE domain containing protein, putative, expressed K18211: synaptosomal-associated protein 25
3 Sobic.010G083600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF1645 domain containing protein, putative, expressed -
4 Sobic.007G090300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.005G109000 cytochrome P450, putative, expressed -
6 Sobic.010G102000 U-box protein CMPG1, putative, expressed -
7 Sobic.001G341600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@tyrosine protein kinase domain containing protein, putative, expressed -
8 Sobic.007G145700 expressed protein -
9 Sobic.002G374100 tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@zinc-finger protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
10 Sobic.001G314700 uncharacterized Cys-rich domain containing protein, putative, expressed -
11 Sobic.002G214800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@zinc-finger protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
12 Sobic.007G196600 proteophosphoglycan ppg4, putative, expressed K13456: RPM1-interacting protein 4
13 Sobic.002G245800 AN1-like zinc finger domain containing protein, expressed -
14 Sobic.003G425200 Calmodulin-like protein 1(PubMedID : 24906815)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@calmodulin-like protein 1, putative, expressed K13448: calcium-binding protein CML
15 Sobic.003G296700 protein kinase domain containing protein, expressed -
16 Sobic.009G217500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@STE_MEKK_ste11_MAP3K.18 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
17 Sobic.002G343500 CAMK_CAMK_like.34 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
18 Sobic.010G209100 WRKY28, expressed -
19 Sobic.007G011000 synaptobrevin-related family protein, putative, expressed -
20 Sobic.002G353400 transporter-related, putative, expressed K15285: solute carrier family 35, member E3


Gene co-expression network
sample Sobic003G352400 Sobic003G352400 Sobic003G341100 Sobic003G341100 Sobic003G352400--Sobic003G341100 Sobic002G118600 Sobic002G118600 Sobic003G352400--Sobic002G118600 Sobic010G083600 Sobic010G083600 Sobic003G352400--Sobic010G083600 Sobic007G090300 Sobic007G090300 Sobic003G352400--Sobic007G090300 Sobic005G109000 Sobic005G109000 Sobic003G352400--Sobic005G109000 Sobic010G102000 Sobic010G102000 Sobic003G352400--Sobic010G102000 Sobic001G341600 Sobic001G341600 Sobic003G352400--Sobic001G341600 Sobic007G145700 Sobic007G145700 Sobic003G352400--Sobic007G145700 Sobic002G374100 Sobic002G374100 Sobic003G352400--Sobic002G374100 Sobic009G217500 Sobic009G217500 Sobic003G341100--Sobic009G217500 Sobic003G341100--Sobic007G145700 Sobic009G044400 Sobic009G044400 Sobic003G341100--Sobic009G044400 Sobic007G077100 Sobic007G077100 Sobic003G341100--Sobic007G077100 Sobic003G341100--Sobic010G102000 Sobic003G341100--Sobic001G341600 Sobic006G273800 Sobic006G273800 Sobic003G341100--Sobic006G273800 Sobic010G023200 Sobic010G023200 Sobic003G341100--Sobic010G023200 Sobic003G341100--Sobic002G118600 Sobic001G147200 Sobic001G147200 Sobic002G118600--Sobic001G147200 Sobic002G118600--Sobic001G341600 Sobic002G118600--Sobic003G341100 Sobic010G228000 Sobic010G228000 Sobic002G118600--Sobic010G228000 Sobic002G118600--Sobic002G374100 Sobic001G290400 Sobic001G290400 Sobic002G118600--Sobic001G290400 Sobic007G011000 Sobic007G011000 Sobic002G118600--Sobic007G011000 Sobic001G538866 Sobic001G538866 Sobic002G118600--Sobic001G538866 Sobic006G228300 Sobic006G228300 Sobic002G118600--Sobic006G228300 Sobic010G209100 Sobic010G209100 Sobic010G083600--Sobic010G209100 Sobic010G083600--Sobic005G109000 Sobic001G059400 Sobic001G059400 Sobic010G083600--Sobic001G059400 Sobic010G083600--Sobic003G341100 Sobic010G083600--Sobic009G217500 Sobic006G066200 Sobic006G066200 Sobic010G083600--Sobic006G066200 Sobic010G083600--Sobic003G352400 Sobic003G430400 Sobic003G430400 Sobic010G083600--Sobic003G430400 Sobic010G083600--Sobic007G077100 Sobic009G100500 Sobic009G100500 Sobic007G090300--Sobic009G100500 Sobic006G259000 Sobic006G259000 Sobic007G090300--Sobic006G259000 Sobic002G199500 Sobic002G199500 Sobic007G090300--Sobic002G199500 Sobic007G090300--Sobic001G059400 Sobic007G090300--Sobic010G102000 Sobic007G090300--Sobic003G352400 Sobic002G232800 Sobic002G232800 Sobic007G090300--Sobic002G232800 Sobic002G138700 Sobic002G138700 Sobic007G090300--Sobic002G138700 Sobic007G090300--Sobic003G341100 Sobic005G109000--Sobic010G209100 Sobic002G214800 Sobic002G214800 Sobic005G109000--Sobic002G214800 Sobic002G202100 Sobic002G202100 Sobic005G109000--Sobic002G202100 Sobic007G151100 Sobic007G151100 Sobic005G109000--Sobic007G151100 Sobic002G245800 Sobic002G245800 Sobic005G109000--Sobic002G245800 Sobic010G267600 Sobic010G267600 Sobic005G109000--Sobic010G267600 Sobic001G259600 Sobic001G259600 Sobic005G109000--Sobic001G259600 Sobic005G109000--Sobic010G083600 Sobic001G449700 Sobic001G449700 Sobic005G109000--Sobic001G449700 Sobic010G102000--Sobic009G217500 Sobic010G105300 Sobic010G105300 Sobic010G102000--Sobic010G105300 Sobic010G102000--Sobic003G341100 Sobic010G102000--Sobic002G232800 Sobic001G064900 Sobic001G064900 Sobic010G102000--Sobic001G064900 Sobic010G102000--Sobic007G145700 Sobic010G102000--Sobic010G023200 Sobic010G102000--Sobic007G077100 Sobic010G102000--Sobic006G273800 Sobic009G217600 Sobic009G217600 Sobic001G341600--Sobic009G217600 Sobic001G441100 Sobic001G441100 Sobic001G341600--Sobic001G441100 Sobic001G035000 Sobic001G035000 Sobic001G341600--Sobic001G035000 Sobic001G077400 Sobic001G077400 Sobic001G341600--Sobic001G077400 Sobic004G280900 Sobic004G280900 Sobic001G341600--Sobic004G280900 Sobic002G140300 Sobic002G140300 Sobic001G341600--Sobic002G140300 Sobic003G353800 Sobic003G353800 Sobic001G341600--Sobic003G353800 Sobic002G278500 Sobic002G278500 Sobic001G341600--Sobic002G278500 Sobic001G341600--Sobic001G538866 Sobic007G145700--Sobic003G341100 Sobic002G294600 Sobic002G294600 Sobic007G145700--Sobic002G294600 Sobic007G145700--Sobic010G102000 Sobic001G462800 Sobic001G462800 Sobic007G145700--Sobic001G462800 Sobic006G146500 Sobic006G146500 Sobic007G145700--Sobic006G146500 Sobic007G145700--Sobic009G217500 Sobic001G095700 Sobic001G095700 Sobic007G145700--Sobic001G095700 Sobic007G145700--Sobic009G044400 Sobic007G145700--Sobic006G273800 Sobic002G294700 Sobic002G294700 Sobic002G374100--Sobic002G294700 Sobic010G246000 Sobic010G246000 Sobic002G374100--Sobic010G246000 Sobic001G516600 Sobic001G516600 Sobic002G374100--Sobic001G516600 Sobic002G354900 Sobic002G354900 Sobic002G374100--Sobic002G354900 Sobic002G374100--Sobic010G228000 Sobic004G036600 Sobic004G036600 Sobic002G374100--Sobic004G036600 Sobic002G353400 Sobic002G353400 Sobic002G374100--Sobic002G353400 Sobic008G177800 Sobic008G177800 Sobic002G374100--Sobic008G177800 Sobic002G374100--Sobic002G118600
Octagon: transcription factors


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