Gene annotation
Transcriptome id Sobic.007G196600.1
Synonym Sb07g026510, RIN4
Functional annotation proteophosphoglycan ppg4, putative, expressed
UniProt A0A1B6PIP3
Pfam PF05627
Panther DB PTHR33159 PTHR33159:SF6
NCBI CDD -
KEGG Orthology K13456; RPM1-interacting protein 4
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G25070 : RPM1 interacting protein 4
RAP-DB (Rice) LOC_Os08g41470.2 : proteophosphoglycan ppg4, putative, expressed
MaizeGDB (Corn) Zm00025a005232
Brachypodium KQJ99083
Barley HORVU7Hr1G053300.4 , HORVU7Hr1G053300.5 , HORVU7Hr1G053300.2 , HORVU7Hr1G053300.3 , HORVU7Hr1G053300.1
Wheat TraesCS7A02G257200 , TraesCS7A02G257200 , TraesCS7D02G258000 , TraesCS7D02G258000 , TraesCS7B02G154100 , TraesCS7B02G154100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G118600 SNARE domain containing protein, putative, expressed K18211: synaptosomal-associated protein 25
2 Sobic.001G343900 tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM domain containing protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
3 Sobic.003G352400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@C2 domain containing protein, putative, expressed -
4 Sobic.007G044300 similar to Os08g0155400 protein(PubMedID : 29862293)@peptide transporter PTR2, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
5 Sobic.006G044932 - -
6 Sobic.001G314700 uncharacterized Cys-rich domain containing protein, putative, expressed -
7 Sobic.001G410100 CGMC_MAPKCGMC_2_ERK.2 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
8 Sobic.009G046600 stress-related protein, putative, expressed -
9 Sobic.002G222800 galactosyltransferase, putative, expressed -
10 Sobic.006G192500 CAMK_CAMK_like.27 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
11 Sobic.004G182300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MLO domain containing protein, putative, expressed K08472: mlo protein
12 Sobic.003G369500 NPL4, putative, expressed K14015: NPLOC4, nuclear protein localization protein 4 homolog
13 Sobic.002G374100 tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@zinc-finger protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
14 Sobic.002G057600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.006G265000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@AMP-binding enzyme, putative, expressed -
16 Sobic.001G450700 RHsf 8/ Hsf 3(PubMedID : 27006630)@HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
17 Sobic.001G216300 glutaredoxin domain containing protein, putative, expressed -
18 Sobic.007G006600 expressed protein -
19 Sobic.001G162100 WRKY94, expressed -
20 Sobic.010G062800 transporter, major facilitator family, putative, expressed K13783: MFS transporter, OPA family, solute carrier family 37 (glycerol-3-phosphate transporter), member 1/2


Gene co-expression network
sample Sobic007G196600 Sobic007G196600 Sobic002G118600 Sobic002G118600 Sobic007G196600--Sobic002G118600 Sobic001G343900 Sobic001G343900 Sobic007G196600--Sobic001G343900 Sobic003G352400 Sobic003G352400 Sobic007G196600--Sobic003G352400 Sobic007G044300 Sobic007G044300 Sobic007G196600--Sobic007G044300 Sobic006G044932 Sobic006G044932 Sobic007G196600--Sobic006G044932 Sobic001G314700 Sobic001G314700 Sobic007G196600--Sobic001G314700 Sobic001G410100 Sobic001G410100 Sobic007G196600--Sobic001G410100 Sobic009G046600 Sobic009G046600 Sobic007G196600--Sobic009G046600 Sobic002G222800 Sobic002G222800 Sobic007G196600--Sobic002G222800 Sobic001G147200 Sobic001G147200 Sobic002G118600--Sobic001G147200 Sobic001G341600 Sobic001G341600 Sobic002G118600--Sobic001G341600 Sobic003G341100 Sobic003G341100 Sobic002G118600--Sobic003G341100 Sobic010G228000 Sobic010G228000 Sobic002G118600--Sobic010G228000 Sobic002G374100 Sobic002G374100 Sobic002G118600--Sobic002G374100 Sobic001G290400 Sobic001G290400 Sobic002G118600--Sobic001G290400 Sobic007G011000 Sobic007G011000 Sobic002G118600--Sobic007G011000 Sobic001G538866 Sobic001G538866 Sobic002G118600--Sobic001G538866 Sobic006G228300 Sobic006G228300 Sobic002G118600--Sobic006G228300 Sobic001G343900--Sobic006G044932 Sobic002G407700 Sobic002G407700 Sobic001G343900--Sobic002G407700 Sobic001G343900--Sobic007G196600 Sobic001G343900--Sobic007G044300 Sobic005G228000 Sobic005G228000 Sobic001G343900--Sobic005G228000 Sobic004G186500 Sobic004G186500 Sobic001G343900--Sobic004G186500 Sobic001G343900--Sobic001G410100 Sobic007G195701 Sobic007G195701 Sobic001G343900--Sobic007G195701 Sobic001G343900--Sobic002G222800 Sobic003G352400--Sobic003G341100 Sobic003G352400--Sobic002G118600 Sobic010G083600 Sobic010G083600 Sobic003G352400--Sobic010G083600 Sobic007G090300 Sobic007G090300 Sobic003G352400--Sobic007G090300 Sobic005G109000 Sobic005G109000 Sobic003G352400--Sobic005G109000 Sobic010G102000 Sobic010G102000 Sobic003G352400--Sobic010G102000 Sobic003G352400--Sobic001G341600 Sobic007G145700 Sobic007G145700 Sobic003G352400--Sobic007G145700 Sobic003G352400--Sobic002G374100 Sobic007G044300--Sobic001G343900 Sobic007G044300--Sobic007G196600 Sobic003G369500 Sobic003G369500 Sobic007G044300--Sobic003G369500 Sobic007G006600 Sobic007G006600 Sobic007G044300--Sobic007G006600 Sobic001G162100 Sobic001G162100 Sobic007G044300--Sobic001G162100 Sobic007G044300--Sobic001G410100 Sobic006G265000 Sobic006G265000 Sobic007G044300--Sobic006G265000 Sobic001G216300 Sobic001G216300 Sobic007G044300--Sobic001G216300 Sobic002G333600 Sobic002G333600 Sobic007G044300--Sobic002G333600 Sobic003G277500 Sobic003G277500 Sobic006G044932--Sobic003G277500 Sobic006G044932--Sobic001G343900 Sobic006G044932--Sobic002G407700 Sobic004G010300 Sobic004G010300 Sobic006G044932--Sobic004G010300 Sobic006G044932--Sobic005G228000 Sobic002G373001 Sobic002G373001 Sobic006G044932--Sobic002G373001 Sobic006G044932--Sobic007G196600 Sobic006G138500 Sobic006G138500 Sobic006G044932--Sobic006G138500 Sobic002G333300 Sobic002G333300 Sobic006G044932--Sobic002G333300 Sobic001G314700--Sobic007G145700 Sobic004G025000 Sobic004G025000 Sobic001G314700--Sobic004G025000 Sobic001G081600 Sobic001G081600 Sobic001G314700--Sobic001G081600 Sobic006G146500 Sobic006G146500 Sobic001G314700--Sobic006G146500 Sobic001G462800 Sobic001G462800 Sobic001G314700--Sobic001G462800 Sobic001G314700--Sobic003G341100 Sobic002G294600 Sobic002G294600 Sobic001G314700--Sobic002G294600 Sobic001G314700--Sobic003G352400 Sobic001G314700--Sobic002G118600 Sobic001G287600 Sobic001G287600 Sobic001G410100--Sobic001G287600 Sobic002G207300 Sobic002G207300 Sobic001G410100--Sobic002G207300 Sobic001G410100--Sobic003G341100 Sobic001G410100--Sobic007G011000 Sobic009G100500 Sobic009G100500 Sobic001G410100--Sobic009G100500 Sobic001G410100--Sobic002G118600 Sobic009G044400 Sobic009G044400 Sobic001G410100--Sobic009G044400 Sobic007G212200 Sobic007G212200 Sobic001G410100--Sobic007G212200 Sobic004G065900 Sobic004G065900 Sobic001G410100--Sobic004G065900 Sobic004G157000 Sobic004G157000 Sobic009G046600--Sobic004G157000 Sobic005G028700 Sobic005G028700 Sobic009G046600--Sobic005G028700 Sobic009G129000 Sobic009G129000 Sobic009G046600--Sobic009G129000 Sobic001G399100 Sobic001G399100 Sobic009G046600--Sobic001G399100 Sobic010G041700 Sobic010G041700 Sobic009G046600--Sobic010G041700 Sobic009G023200 Sobic009G023200 Sobic009G046600--Sobic009G023200 Sobic002G245800 Sobic002G245800 Sobic009G046600--Sobic002G245800 Sobic010G178200 Sobic010G178200 Sobic009G046600--Sobic010G178200 Sobic007G151100 Sobic007G151100 Sobic009G046600--Sobic007G151100 Sobic009G155200 Sobic009G155200 Sobic002G222800--Sobic009G155200 Sobic006G192500 Sobic006G192500 Sobic002G222800--Sobic006G192500 Sobic001G157200 Sobic001G157200 Sobic002G222800--Sobic001G157200 Sobic002G379866 Sobic002G379866 Sobic002G222800--Sobic002G379866 Sobic008G059200 Sobic008G059200 Sobic002G222800--Sobic008G059200 Sobic006G078400 Sobic006G078400 Sobic002G222800--Sobic006G078400 Sobic010G107100 Sobic010G107100 Sobic002G222800--Sobic010G107100 Sobic002G222800--Sobic001G399100 Sobic004G158901 Sobic004G158901 Sobic002G222800--Sobic004G158901
Octagon: transcription factors


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