Gene annotation
Transcriptome id Sobic.004G182300.3,Sobic.004G182300.2,Sobic.004G182300.4
Synonym ATMLO1, MLO1, Sb04g023170
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
MLO domain containing protein, putative, expressed
UniProt A0A1Z5RN91 , C5XUZ2 , A0A1Z5RNA5
Pfam PF03094
Panther DB PTHR31942 PTHR31942:SF31
NCBI CDD -
KEGG Orthology K08472; mlo protein
Gene Ontology GO:0016021; integral component of membrane GO:0006952defense response


Orthologs (automatic annotation)
TAIR AT4G02600 : Seven transmembrane MLO family protein
RAP-DB (Rice) LOC_Os01g66510.1 : MLO domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a031645 , Zm00025a031644 , Zm00025a026502 , Zm00025a043713
Brachypodium PNT73344 , KQK06217
Barley HORVU1Hr1G064440.5 , HORVU1Hr1G064440.4 , HORVU1Hr1G064440.1 , HORVU7Hr1G002390.7 , HORVU7Hr1G002390.6 , HORVU7Hr1G002390.3 , HORVU7Hr1G002390.1 , HORVU0Hr1G008830.6 , HORVU0Hr1G008830.5 , HORVU0Hr1G008830.2 , HORVU1Hr1G064440.6 , HORVU1Hr1G064440.2 , HORVU7Hr1G002390.16 , HORVU7Hr1G002390.15 , HORVU7Hr1G002390.14 , HORVU7Hr1G002390.13 , HORVU7Hr1G002390.12 , HORVU7Hr1G002390.11 , HORVU7Hr1G002390.10
Wheat TraesCS2A02G083700 , TraesCS1B02G272200 , TraesCS1B02G272200 , TraesCS2D02G081500 , TraesCS2D02G081500 , TraesCS3A02G005500 , TraesCS1A02G261400 , TraesCS3D02G005300 , TraesCS7D02G027400 , TraesCS1D02G261400 , TraesCS7D02G018800 , TraesCS2B02G097900 , TraesCS2B02G328700 , TraesCS2D02G310400
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.004G182300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G196600 proteophosphoglycan ppg4, putative, expressed K13456: RPM1-interacting protein 4
2 Sobic.001G074200 LRR receptor-like protein kinase, putative, expressed -
3 Sobic.003G146100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@methyltransferase, putative, expressed -
4 Sobic.001G157200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@amino acid permease family protein, putative, expressed K03294: basic amino acid/polyamine antiporter, APA family
5 Sobic.002G379866 - -
6 Sobic.001G314700 uncharacterized Cys-rich domain containing protein, putative, expressed -
7 Sobic.009G171600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@WRKY70, expressed -
8 Sobic.002G222800 galactosyltransferase, putative, expressed -
9 Sobic.004G058000 VQ domain containing protein, putative, expressed -
10 Sobic.002G118600 SNARE domain containing protein, putative, expressed K18211: synaptosomal-associated protein 25
11 Sobic.005G117400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@transcription factor(PubMedID : 30367619)@WRKY72, expressed -
12 Sobic.007G090300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.004G158901 - -
14 Sobic.001G454200 - -
15 Sobic.007G125900 protein kinase domain containing protein, expressed -
16 Sobic.010G163000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@reticuline oxidase-like protein precursor, putative, expressed -
17 Sobic.009G241700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@oxidoreductase, 2OG-FeII oxygenase domain containing protein, putative, expressed -
18 Sobic.010G102150 - -
19 Sobic.001G343900 tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM domain containing protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
20 Sobic.006G192500 CAMK_CAMK_like.27 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase


Gene co-expression network
sample Sobic004G182300 Sobic004G182300 Sobic007G196600 Sobic007G196600 Sobic004G182300--Sobic007G196600 Sobic001G074200 Sobic001G074200 Sobic004G182300--Sobic001G074200 Sobic003G146100 Sobic003G146100 Sobic004G182300--Sobic003G146100 Sobic001G157200 Sobic001G157200 Sobic004G182300--Sobic001G157200 Sobic002G379866 Sobic002G379866 Sobic004G182300--Sobic002G379866 Sobic001G314700 Sobic001G314700 Sobic004G182300--Sobic001G314700 Sobic009G171600 Sobic009G171600 Sobic004G182300--Sobic009G171600 Sobic002G222800 Sobic002G222800 Sobic004G182300--Sobic002G222800 Sobic004G058000 Sobic004G058000 Sobic004G182300--Sobic004G058000 Sobic002G118600 Sobic002G118600 Sobic007G196600--Sobic002G118600 Sobic001G343900 Sobic001G343900 Sobic007G196600--Sobic001G343900 Sobic003G352400 Sobic003G352400 Sobic007G196600--Sobic003G352400 Sobic007G044300 Sobic007G044300 Sobic007G196600--Sobic007G044300 Sobic006G044932 Sobic006G044932 Sobic007G196600--Sobic006G044932 Sobic007G196600--Sobic001G314700 Sobic001G410100 Sobic001G410100 Sobic007G196600--Sobic001G410100 Sobic009G046600 Sobic009G046600 Sobic007G196600--Sobic009G046600 Sobic007G196600--Sobic002G222800 Sobic009G127000 Sobic009G127000 Sobic001G074200--Sobic009G127000 Sobic007G125900 Sobic007G125900 Sobic001G074200--Sobic007G125900 Sobic008G115500 Sobic008G115500 Sobic001G074200--Sobic008G115500 Sobic001G074200--Sobic002G379866 Sobic001G147200 Sobic001G147200 Sobic001G074200--Sobic001G147200 Sobic001G074200--Sobic001G157200 Sobic005G117400 Sobic005G117400 Sobic001G074200--Sobic005G117400 Sobic001G074200--Sobic002G118600 Sobic010G228000 Sobic010G228000 Sobic001G074200--Sobic010G228000 Sobic003G146100--Sobic002G379866 Sobic010G163000 Sobic010G163000 Sobic003G146100--Sobic010G163000 Sobic003G019200 Sobic003G019200 Sobic003G146100--Sobic003G019200 Sobic001G399100 Sobic001G399100 Sobic003G146100--Sobic001G399100 Sobic005G109000 Sobic005G109000 Sobic003G146100--Sobic005G109000 Sobic002G232800 Sobic002G232800 Sobic003G146100--Sobic002G232800 Sobic003G341100 Sobic003G341100 Sobic003G146100--Sobic003G341100 Sobic006G192500 Sobic006G192500 Sobic003G146100--Sobic006G192500 Sobic003G146100--Sobic002G118600 Sobic001G157200--Sobic002G379866 Sobic001G157200--Sobic002G222800 Sobic001G157200--Sobic001G074200 Sobic001G157200--Sobic005G117400 Sobic004G158901 Sobic004G158901 Sobic001G157200--Sobic004G158901 Sobic001G157200--Sobic004G058000 Sobic001G157200--Sobic007G125900 Sobic005G105300 Sobic005G105300 Sobic001G157200--Sobic005G105300 Sobic004G067200 Sobic004G067200 Sobic001G157200--Sobic004G067200 Sobic002G379866--Sobic003G146100 Sobic002G379866--Sobic001G157200 Sobic002G379866--Sobic002G222800 Sobic002G379866--Sobic001G074200 Sobic002G379866--Sobic002G118600 Sobic006G078400 Sobic006G078400 Sobic002G379866--Sobic006G078400 Sobic002G379866--Sobic004G158901 Sobic002G379866--Sobic001G147200 Sobic002G224100 Sobic002G224100 Sobic002G379866--Sobic002G224100 Sobic007G145700 Sobic007G145700 Sobic001G314700--Sobic007G145700 Sobic004G025000 Sobic004G025000 Sobic001G314700--Sobic004G025000 Sobic001G081600 Sobic001G081600 Sobic001G314700--Sobic001G081600 Sobic006G146500 Sobic006G146500 Sobic001G314700--Sobic006G146500 Sobic001G462800 Sobic001G462800 Sobic001G314700--Sobic001G462800 Sobic001G314700--Sobic003G341100 Sobic002G294600 Sobic002G294600 Sobic001G314700--Sobic002G294600 Sobic001G314700--Sobic003G352400 Sobic001G314700--Sobic002G118600 Sobic010G102150 Sobic010G102150 Sobic009G171600--Sobic010G102150 Sobic007G158500 Sobic007G158500 Sobic009G171600--Sobic007G158500 Sobic002G024000 Sobic002G024000 Sobic009G171600--Sobic002G024000 Sobic009G171600--Sobic004G182300 Sobic009G171600--Sobic010G163000 Sobic009G171600--Sobic004G058000 Sobic007G090300 Sobic007G090300 Sobic009G171600--Sobic007G090300 Sobic009G241700 Sobic009G241700 Sobic009G171600--Sobic009G241700 Sobic005G080200 Sobic005G080200 Sobic009G171600--Sobic005G080200 Sobic009G155200 Sobic009G155200 Sobic002G222800--Sobic009G155200 Sobic002G222800--Sobic006G192500 Sobic002G222800--Sobic001G157200 Sobic002G222800--Sobic002G379866 Sobic008G059200 Sobic008G059200 Sobic002G222800--Sobic008G059200 Sobic002G222800--Sobic006G078400 Sobic010G107100 Sobic010G107100 Sobic002G222800--Sobic010G107100 Sobic002G222800--Sobic001G399100 Sobic002G222800--Sobic004G158901 Sobic004G058000--Sobic010G107100 Sobic004G058000--Sobic001G399100 Sobic004G058000--Sobic005G117400 Sobic010G224200 Sobic010G224200 Sobic004G058000--Sobic010G224200 Sobic004G058000--Sobic009G241700 Sobic004G058000--Sobic004G158901 Sobic004G058000--Sobic003G019200 Sobic004G050000 Sobic004G050000 Sobic004G058000--Sobic004G050000 Sobic002G249000 Sobic002G249000 Sobic004G058000--Sobic002G249000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.