Gene annotation
Transcriptome id Sobic.010G163000.1
Synonym Sb10g021700
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
reticuline oxidase-like protein precursor, putative, expressed
UniProt C5Z484
Pfam PF02159 PF08031 PF01565
Panther DB PTHR32448 PTHR32448:SF20
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005634nucleus GO:0005496steroid binding GO:0003677DNA binding GO:0016491oxidoreductase activity


Orthologs (automatic annotation)
TAIR AT5G44400 : FAD-binding Berberine family protein
RAP-DB (Rice) LOC_Os06g35700.1 : reticuline oxidase-like protein precursor, putative, expressed
MaizeGDB (Corn) Zm00025a051098 , Zm00025a051097 , Zm00025a020032 , Zm00025a042344 , Zm00025a042340
Brachypodium KQJ94235 , KQJ81758 , KQJ98133 , KQJ81772 , KQK18046 , KQK18047 , PNT63632
Barley HORVU7Hr1G089160.1 , HORVU7Hr1G089160.3 , HORVU7Hr1G089160.2 , HORVU7Hr1G026630.1 , HORVU7Hr1G026630.4 , HORVU7Hr1G026630.5 , HORVU7Hr1G026630.2 , HORVU7Hr1G026630.3 , HORVU2Hr1G000540.1 , HORVU7Hr1G089250.1 , HORVU7Hr1G089260.1 , HORVU2Hr1G000490.1 , HORVU3Hr1G020240.1 , HORVU4Hr1G086520.1 , HORVU2Hr1G013930.1 , HORVU7Hr1G089190.1 , HORVU1Hr1G092680.1 , HORVU7Hr1G089210.1 , HORVU2Hr1G122590.1 , HORVU2Hr1G000530.1 , HORVU4Hr1G017270.1 , HORVU2Hr1G021650.1 , HORVU2Hr1G021650.2 , HORVU7Hr1G089280.1 , HORVU7Hr1G093940.1
Wheat TraesCS1A02G424100 , TraesCS7B02G026000 , TraesCS7A02G354100 , TraesCS2B02G017300 , TraesCS1B02G456900 , TraesCS4D02G352100 , TraesCS7D02G369200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G102150 - -
2 Sobic.005G229700 GRAS family transcription factor domain containing protein, expressed -
3 Sobic.001G454100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transporter family protein, putative, expressed -
4 Sobic.003G146100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@methyltransferase, putative, expressed -
5 Sobic.010G107100 expressed protein -
6 Sobic.001G399100 peroxisomal biogenesis factor 11, putative, expressed -
7 Sobic.005G109000 cytochrome P450, putative, expressed -
8 Sobic.001G195100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
9 Sobic.004G158901 - -
10 Sobic.002G377100 DUF1645 domain containing protein, putative, expressed -
11 Sobic.010G083600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF1645 domain containing protein, putative, expressed -
12 Sobic.001G059400 acetyltransferase, GNAT family, putative, expressed -
13 Sobic.002G232800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@zinc finger, C3HC4 type domain containing protein, expressed K10664: E3 ubiquitin-protein ligase ATL6/9/15/31/42/55
14 Sobic.010G071000 zinc finger, C3HC4 type domain containing protein, expressed -
15 Sobic.007G090300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
16 Sobic.006G216700 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@expressed protein -
17 Sobic.003G144800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.004G058000 VQ domain containing protein, putative, expressed -
19 Sobic.003G250600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OsGrx_I1 - glutaredoxin subgroup III, expressed -
20 Sobic.004G297100 Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed K09286: EREBP-like factor


Gene co-expression network
sample Sobic010G163000 Sobic010G163000 Sobic010G102150 Sobic010G102150 Sobic010G163000--Sobic010G102150 Sobic005G229700 Sobic005G229700 Sobic010G163000--Sobic005G229700 Sobic001G454100 Sobic001G454100 Sobic010G163000--Sobic001G454100 Sobic003G146100 Sobic003G146100 Sobic010G163000--Sobic003G146100 Sobic010G107100 Sobic010G107100 Sobic010G163000--Sobic010G107100 Sobic001G399100 Sobic001G399100 Sobic010G163000--Sobic001G399100 Sobic005G109000 Sobic005G109000 Sobic010G163000--Sobic005G109000 Sobic001G195100 Sobic001G195100 Sobic010G163000--Sobic001G195100 Sobic004G158901 Sobic004G158901 Sobic010G163000--Sobic004G158901 Sobic010G102150--Sobic010G163000 Sobic001G059400 Sobic001G059400 Sobic010G102150--Sobic001G059400 Sobic001G318200 Sobic001G318200 Sobic010G102150--Sobic001G318200 Sobic010G102150--Sobic001G454100 Sobic002G199500 Sobic002G199500 Sobic010G102150--Sobic002G199500 Sobic005G080200 Sobic005G080200 Sobic010G102150--Sobic005G080200 Sobic007G090300 Sobic007G090300 Sobic010G102150--Sobic007G090300 Sobic004G297100 Sobic004G297100 Sobic010G102150--Sobic004G297100 Sobic002G377100 Sobic002G377100 Sobic010G102150--Sobic002G377100 Sobic003G265200 Sobic003G265200 Sobic005G229700--Sobic003G265200 Sobic001G422900 Sobic001G422900 Sobic005G229700--Sobic001G422900 Sobic002G245800 Sobic002G245800 Sobic005G229700--Sobic002G245800 Sobic001G037000 Sobic001G037000 Sobic005G229700--Sobic001G037000 Sobic005G229700--Sobic001G399100 Sobic003G181500 Sobic003G181500 Sobic005G229700--Sobic003G181500 Sobic002G055600 Sobic002G055600 Sobic005G229700--Sobic002G055600 Sobic009G070400 Sobic009G070400 Sobic005G229700--Sobic009G070400 Sobic002G333400 Sobic002G333400 Sobic005G229700--Sobic002G333400 Sobic001G454100--Sobic010G107100 Sobic001G454100--Sobic010G163000 Sobic001G454100--Sobic005G229700 Sobic006G216700 Sobic006G216700 Sobic001G454100--Sobic006G216700 Sobic003G192100 Sobic003G192100 Sobic001G454100--Sobic003G192100 Sobic003G285500 Sobic003G285500 Sobic001G454100--Sobic003G285500 Sobic006G158600 Sobic006G158600 Sobic001G454100--Sobic006G158600 Sobic003G215800 Sobic003G215800 Sobic001G454100--Sobic003G215800 Sobic008G059200 Sobic008G059200 Sobic001G454100--Sobic008G059200 Sobic002G379866 Sobic002G379866 Sobic003G146100--Sobic002G379866 Sobic003G146100--Sobic010G163000 Sobic003G019200 Sobic003G019200 Sobic003G146100--Sobic003G019200 Sobic003G146100--Sobic001G399100 Sobic003G146100--Sobic005G109000 Sobic002G232800 Sobic002G232800 Sobic003G146100--Sobic002G232800 Sobic003G341100 Sobic003G341100 Sobic003G146100--Sobic003G341100 Sobic006G192500 Sobic006G192500 Sobic003G146100--Sobic006G192500 Sobic002G118600 Sobic002G118600 Sobic003G146100--Sobic002G118600 Sobic010G107100--Sobic001G399100 Sobic004G058000 Sobic004G058000 Sobic010G107100--Sobic004G058000 Sobic010G107100--Sobic005G229700 Sobic009G200700 Sobic009G200700 Sobic010G107100--Sobic009G200700 Sobic010G107100--Sobic003G192100 Sobic009G143400 Sobic009G143400 Sobic010G107100--Sobic009G143400 Sobic002G423300 Sobic002G423300 Sobic010G107100--Sobic002G423300 Sobic009G241700 Sobic009G241700 Sobic010G107100--Sobic009G241700 Sobic006G230500 Sobic006G230500 Sobic010G107100--Sobic006G230500 Sobic009G033700 Sobic009G033700 Sobic001G399100--Sobic009G033700 Sobic009G046600 Sobic009G046600 Sobic001G399100--Sobic009G046600 Sobic001G399100--Sobic010G107100 Sobic004G186500 Sobic004G186500 Sobic001G399100--Sobic004G186500 Sobic001G399100--Sobic003G019200 Sobic001G399100--Sobic009G200700 Sobic005G028700 Sobic005G028700 Sobic001G399100--Sobic005G028700 Sobic001G399100--Sobic005G229700 Sobic010G086200 Sobic010G086200 Sobic001G399100--Sobic010G086200 Sobic010G209100 Sobic010G209100 Sobic005G109000--Sobic010G209100 Sobic002G214800 Sobic002G214800 Sobic005G109000--Sobic002G214800 Sobic002G202100 Sobic002G202100 Sobic005G109000--Sobic002G202100 Sobic007G151100 Sobic007G151100 Sobic005G109000--Sobic007G151100 Sobic005G109000--Sobic002G245800 Sobic010G267600 Sobic010G267600 Sobic005G109000--Sobic010G267600 Sobic001G259600 Sobic001G259600 Sobic005G109000--Sobic001G259600 Sobic010G083600 Sobic010G083600 Sobic005G109000--Sobic010G083600 Sobic001G449700 Sobic001G449700 Sobic005G109000--Sobic001G449700 Sobic001G314800 Sobic001G314800 Sobic001G195100--Sobic001G314800 Sobic003G102200 Sobic003G102200 Sobic001G195100--Sobic003G102200 Sobic001G195100--Sobic004G297100 Sobic001G195100--Sobic001G059400 Sobic007G118301 Sobic007G118301 Sobic001G195100--Sobic007G118301 Sobic001G195100--Sobic007G090300 Sobic001G195100--Sobic005G109000 Sobic001G088300 Sobic001G088300 Sobic001G195100--Sobic001G088300 Sobic003G296300 Sobic003G296300 Sobic001G195100--Sobic003G296300 Sobic002G224100 Sobic002G224100 Sobic004G158901--Sobic002G224100 Sobic005G117400 Sobic005G117400 Sobic004G158901--Sobic005G117400 Sobic004G158901--Sobic004G058000 Sobic004G158901--Sobic009G241700 Sobic004G158901--Sobic006G192500 Sobic004G158901--Sobic001G399100 Sobic004G158901--Sobic002G379866 Sobic007G025700 Sobic007G025700 Sobic004G158901--Sobic007G025700 Sobic004G158901--Sobic010G163000
Octagon: transcription factors


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