Gene annotation
Transcriptome id Sobic.002G377100.1
Synonym Sb02g039440
Functional annotation DUF1645 domain containing protein, putative, expressed
UniProt C5X2F3
Pfam PF07816
Panther DB PTHR33095 PTHR33095:SF11
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G15760 : Protein of unknown function (DUF1645)
RAP-DB (Rice) LOC_Os07g42740.1 : DUF1645 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a015227 , Zm00025a048775
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G250600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OsGrx_I1 - glutaredoxin subgroup III, expressed -
2 Sobic.001G059400 acetyltransferase, GNAT family, putative, expressed -
3 Sobic.003G254900 no apical meristem protein, putative, expressed -
4 Sobic.003G102200 helix-loop-helix DNA-binding domain containing protein, expressed -
5 Sobic.001G195100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
6 Sobic.010G163000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@reticuline oxidase-like protein precursor, putative, expressed -
7 Sobic.001G449700 highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@cytochrome P450, putative, expressed K01723: hydroperoxide dehydratase
8 Sobic.004G297100 Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed K09286: EREBP-like factor
9 Sobic.002G333400 KI domain interacting kinase 1, putative, expressed -
10 Sobic.006G216700 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@expressed protein -
11 Sobic.005G109000 cytochrome P450, putative, expressed -
12 Sobic.003G037500 WRKY107, expressed -
13 Sobic.010G083600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF1645 domain containing protein, putative, expressed -
14 Sobic.003G110200 NADP-dependent oxidoreductase, putative, expressed K07119: PTGR3, prostaglandin reductase 3
15 Sobic.004G195000 heavy metal transport/detoxification protein, putative, expressed -
16 Sobic.009G221400 B3 DNA binding domain containing protein, expressed K09287: RAV-like factor
17 Sobic.002G318000 DUF584 domain containing protein, putative, expressed -
18 Sobic.002G328400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@TKL_IRAK_DUF26-lc.15 - DUF26 kinases have homology to DUF26 containing loci, expressed -
19 Sobic.001G192600 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed K17794: mitochondrial import inner membrane translocase subunit TIM23
20 Sobic.006G246100 one cut domain family member 3, putative, expressed -


Gene co-expression network
sample Sobic002G377100 Sobic002G377100 Sobic003G250600 Sobic003G250600 Sobic002G377100--Sobic003G250600 Sobic001G059400 Sobic001G059400 Sobic002G377100--Sobic001G059400 Sobic003G254900 Sobic003G254900 Sobic002G377100--Sobic003G254900 Sobic003G102200 Sobic003G102200 Sobic002G377100--Sobic003G102200 Sobic001G195100 Sobic001G195100 Sobic002G377100--Sobic001G195100 Sobic010G163000 Sobic010G163000 Sobic002G377100--Sobic010G163000 Sobic001G449700 Sobic001G449700 Sobic002G377100--Sobic001G449700 Sobic004G297100 Sobic004G297100 Sobic002G377100--Sobic004G297100 Sobic002G333400 Sobic002G333400 Sobic002G377100--Sobic002G333400 Sobic002G328400 Sobic002G328400 Sobic003G250600--Sobic002G328400 Sobic003G250600--Sobic003G102200 Sobic003G250600--Sobic001G449700 Sobic006G216700 Sobic006G216700 Sobic003G250600--Sobic006G216700 Sobic003G250600--Sobic002G377100 Sobic001G259700 Sobic001G259700 Sobic003G250600--Sobic001G259700 Sobic002G395300 Sobic002G395300 Sobic003G250600--Sobic002G395300 Sobic004G169200 Sobic004G169200 Sobic003G250600--Sobic004G169200 Sobic001G481100 Sobic001G481100 Sobic003G250600--Sobic001G481100 Sobic001G059400--Sobic004G297100 Sobic010G083600 Sobic010G083600 Sobic001G059400--Sobic010G083600 Sobic002G199500 Sobic002G199500 Sobic001G059400--Sobic002G199500 Sobic007G090300 Sobic007G090300 Sobic001G059400--Sobic007G090300 Sobic010G102150 Sobic010G102150 Sobic001G059400--Sobic010G102150 Sobic001G059400--Sobic001G195100 Sobic001G059400--Sobic002G377100 Sobic001G059400--Sobic010G163000 Sobic008G188000 Sobic008G188000 Sobic001G059400--Sobic008G188000 Sobic001G192600 Sobic001G192600 Sobic003G254900--Sobic001G192600 Sobic009G221400 Sobic009G221400 Sobic003G254900--Sobic009G221400 Sobic006G274700 Sobic006G274700 Sobic003G254900--Sobic006G274700 Sobic002G192000 Sobic002G192000 Sobic003G254900--Sobic002G192000 Sobic006G158600 Sobic006G158600 Sobic003G254900--Sobic006G158600 Sobic007G149300 Sobic007G149300 Sobic003G254900--Sobic007G149300 Sobic003G254900--Sobic001G449700 Sobic003G254900--Sobic001G481100 Sobic003G037500 Sobic003G037500 Sobic003G254900--Sobic003G037500 Sobic003G102200--Sobic001G449700 Sobic003G110200 Sobic003G110200 Sobic003G102200--Sobic003G110200 Sobic003G102200--Sobic001G195100 Sobic003G102200--Sobic001G259700 Sobic001G383700 Sobic001G383700 Sobic003G102200--Sobic001G383700 Sobic003G102200--Sobic007G149300 Sobic002G342400 Sobic002G342400 Sobic003G102200--Sobic002G342400 Sobic002G373001 Sobic002G373001 Sobic003G102200--Sobic002G373001 Sobic003G102200--Sobic003G250600 Sobic001G314800 Sobic001G314800 Sobic001G195100--Sobic001G314800 Sobic001G195100--Sobic003G102200 Sobic001G195100--Sobic004G297100 Sobic001G195100--Sobic001G059400 Sobic007G118301 Sobic007G118301 Sobic001G195100--Sobic007G118301 Sobic001G195100--Sobic007G090300 Sobic005G109000 Sobic005G109000 Sobic001G195100--Sobic005G109000 Sobic001G088300 Sobic001G088300 Sobic001G195100--Sobic001G088300 Sobic003G296300 Sobic003G296300 Sobic001G195100--Sobic003G296300 Sobic010G163000--Sobic010G102150 Sobic005G229700 Sobic005G229700 Sobic010G163000--Sobic005G229700 Sobic001G454100 Sobic001G454100 Sobic010G163000--Sobic001G454100 Sobic003G146100 Sobic003G146100 Sobic010G163000--Sobic003G146100 Sobic010G107100 Sobic010G107100 Sobic010G163000--Sobic010G107100 Sobic001G399100 Sobic001G399100 Sobic010G163000--Sobic001G399100 Sobic010G163000--Sobic005G109000 Sobic010G163000--Sobic001G195100 Sobic004G158901 Sobic004G158901 Sobic010G163000--Sobic004G158901 Sobic001G449700--Sobic001G383700 Sobic003G202200 Sobic003G202200 Sobic001G449700--Sobic003G202200 Sobic001G449700--Sobic003G110200 Sobic001G449700--Sobic007G149300 Sobic003G021500 Sobic003G021500 Sobic001G449700--Sobic003G021500 Sobic009G036000 Sobic009G036000 Sobic001G449700--Sobic009G036000 Sobic001G449700--Sobic002G333400 Sobic001G449700--Sobic001G259700 Sobic005G186100 Sobic005G186100 Sobic001G449700--Sobic005G186100 Sobic004G297100--Sobic001G059400 Sobic004G297100--Sobic001G195100 Sobic004G297100--Sobic002G199500 Sobic010G102000 Sobic010G102000 Sobic004G297100--Sobic010G102000 Sobic010G075600 Sobic010G075600 Sobic004G297100--Sobic010G075600 Sobic004G297100--Sobic007G090300 Sobic004G297100--Sobic008G188000 Sobic002G232800 Sobic002G232800 Sobic004G297100--Sobic002G232800 Sobic004G297100--Sobic007G118301 Sobic001G407800 Sobic001G407800 Sobic002G333400--Sobic001G407800 Sobic002G333400--Sobic006G158600 Sobic006G056400 Sobic006G056400 Sobic002G333400--Sobic006G056400 Sobic008G136400 Sobic008G136400 Sobic002G333400--Sobic008G136400 Sobic002G333400--Sobic005G186100 Sobic003G369100 Sobic003G369100 Sobic002G333400--Sobic003G369100 Sobic009G151600 Sobic009G151600 Sobic002G333400--Sobic009G151600 Sobic002G140400 Sobic002G140400 Sobic002G333400--Sobic002G140400 Sobic007G074000 Sobic007G074000 Sobic002G333400--Sobic007G074000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.