Gene annotation
Transcriptome id Sobic.003G250600.1
Synonym GRX480, Sb03g030680, roxy19
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
OsGrx_I1 - glutaredoxin subgroup III, expressed
UniProt C5XG10
Pfam PF00462
Panther DB PTHR10168 PTHR10168:SF107
NCBI CDD KOG1752; Glutaredoxin and related proteins
KEGG Orthology -
Gene Ontology GO:0015035; protein disulfide oxidoreductase activity GO:0009055electron transfer activity


Orthologs (automatic annotation)
TAIR AT1G28480 : Thioredoxin superfamily protein
RAP-DB (Rice) LOC_Os01g47760.1 : OsGrx_I1 - glutaredoxin subgroup III, expressed
MaizeGDB (Corn) Zm00025a028121 , Zm00025a038763 , Zm00025a036609 , Zm00025a044567
Brachypodium KQK04880 , PNT72555
Barley HORVU3Hr1G072040.1 , HORVU2Hr1G057870.1 , HORVU1Hr1G092260.1 , HORVU3Hr1G061080.1 , HORVU6Hr1G095340.1 , HORVU6Hr1G095340.2 , HORVU3Hr1G047220.1 , HORVU3Hr1G065250.1
Wheat TraesCS1D02G405200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G328400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@TKL_IRAK_DUF26-lc.15 - DUF26 kinases have homology to DUF26 containing loci, expressed -
2 Sobic.003G102200 helix-loop-helix DNA-binding domain containing protein, expressed -
3 Sobic.001G449700 highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@cytochrome P450, putative, expressed K01723: hydroperoxide dehydratase
4 Sobic.006G216700 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@expressed protein -
5 Sobic.002G377100 DUF1645 domain containing protein, putative, expressed -
6 Sobic.001G259700 tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM domain containing protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
7 Sobic.002G395300 gibberellin receptor GID1L2, putative, expressed -
8 Sobic.004G169200 U-box domain-containing protein, putative, expressed -
9 Sobic.001G481100 DUF581 domain containing protein, expressed -
10 Sobic.005G229700 GRAS family transcription factor domain containing protein, expressed -
11 Sobic.003G202200 uncharacterized protein PA4923, putative, expressed K06966: pyrimidine/purine-5'-nucleotide nucleosidase
12 Sobic.001G383700 OsCML27 - Calmodulin-related calcium sensor protein, expressed K13448: calcium-binding protein CML
13 Sobic.004G241100 NHL repeat-containing protein, putative, expressed -
14 Sobic.003G230100 expressed protein -
15 Sobic.003G265200 B3 DNA binding domain containing protein, expressed K09287: RAV-like factor
16 Sobic.001G295700 Triacylglycerol lipase like protein (Os)(PubMedID : 27208977)@triacylglycerol lipase like protein, putative, expressed -
17 Sobic.003G254900 no apical meristem protein, putative, expressed -
18 Sobic.006G263600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.010G238600 transferase family protein, putative, expressed -
20 Sobic.001G431500 gibberellin receptor GID1L2, putative, expressed -


Gene co-expression network
sample Sobic003G250600 Sobic003G250600 Sobic002G328400 Sobic002G328400 Sobic003G250600--Sobic002G328400 Sobic003G102200 Sobic003G102200 Sobic003G250600--Sobic003G102200 Sobic001G449700 Sobic001G449700 Sobic003G250600--Sobic001G449700 Sobic006G216700 Sobic006G216700 Sobic003G250600--Sobic006G216700 Sobic002G377100 Sobic002G377100 Sobic003G250600--Sobic002G377100 Sobic001G259700 Sobic001G259700 Sobic003G250600--Sobic001G259700 Sobic002G395300 Sobic002G395300 Sobic003G250600--Sobic002G395300 Sobic004G169200 Sobic004G169200 Sobic003G250600--Sobic004G169200 Sobic001G481100 Sobic001G481100 Sobic003G250600--Sobic001G481100 Sobic009G141500 Sobic009G141500 Sobic002G328400--Sobic009G141500 Sobic002G328400--Sobic001G259700 Sobic003G265200 Sobic003G265200 Sobic002G328400--Sobic003G265200 Sobic004G191400 Sobic004G191400 Sobic002G328400--Sobic004G191400 Sobic003G260300 Sobic003G260300 Sobic002G328400--Sobic003G260300 Sobic002G328400--Sobic004G169200 Sobic001G079300 Sobic001G079300 Sobic002G328400--Sobic001G079300 Sobic006G263600 Sobic006G263600 Sobic002G328400--Sobic006G263600 Sobic001G431500 Sobic001G431500 Sobic002G328400--Sobic001G431500 Sobic003G102200--Sobic001G449700 Sobic003G110200 Sobic003G110200 Sobic003G102200--Sobic003G110200 Sobic001G195100 Sobic001G195100 Sobic003G102200--Sobic001G195100 Sobic003G102200--Sobic001G259700 Sobic001G383700 Sobic001G383700 Sobic003G102200--Sobic001G383700 Sobic007G149300 Sobic007G149300 Sobic003G102200--Sobic007G149300 Sobic002G342400 Sobic002G342400 Sobic003G102200--Sobic002G342400 Sobic002G373001 Sobic002G373001 Sobic003G102200--Sobic002G373001 Sobic003G102200--Sobic003G250600 Sobic001G449700--Sobic001G383700 Sobic003G202200 Sobic003G202200 Sobic001G449700--Sobic003G202200 Sobic001G449700--Sobic003G110200 Sobic001G449700--Sobic007G149300 Sobic003G021500 Sobic003G021500 Sobic001G449700--Sobic003G021500 Sobic009G036000 Sobic009G036000 Sobic001G449700--Sobic009G036000 Sobic002G333400 Sobic002G333400 Sobic001G449700--Sobic002G333400 Sobic001G449700--Sobic001G259700 Sobic005G186100 Sobic005G186100 Sobic001G449700--Sobic005G186100 Sobic003G230100 Sobic003G230100 Sobic006G216700--Sobic003G230100 Sobic006G216700--Sobic004G169200 Sobic006G216700--Sobic001G449700 Sobic006G216700--Sobic002G395300 Sobic001G100501 Sobic001G100501 Sobic006G216700--Sobic001G100501 Sobic004G097100 Sobic004G097100 Sobic006G216700--Sobic004G097100 Sobic003G037500 Sobic003G037500 Sobic006G216700--Sobic003G037500 Sobic004G219800 Sobic004G219800 Sobic006G216700--Sobic004G219800 Sobic003G349600 Sobic003G349600 Sobic006G216700--Sobic003G349600 Sobic002G377100--Sobic003G250600 Sobic001G059400 Sobic001G059400 Sobic002G377100--Sobic001G059400 Sobic003G254900 Sobic003G254900 Sobic002G377100--Sobic003G254900 Sobic002G377100--Sobic003G102200 Sobic002G377100--Sobic001G195100 Sobic010G163000 Sobic010G163000 Sobic002G377100--Sobic010G163000 Sobic002G377100--Sobic001G449700 Sobic004G297100 Sobic004G297100 Sobic002G377100--Sobic004G297100 Sobic002G377100--Sobic002G333400 Sobic001G259700--Sobic006G263600 Sobic001G259700--Sobic009G141500 Sobic001G259600 Sobic001G259600 Sobic001G259700--Sobic001G259600 Sobic001G259700--Sobic002G328400 Sobic001G259700--Sobic004G169200 Sobic001G259700--Sobic004G191400 Sobic001G259700--Sobic001G449700 Sobic002G405600 Sobic002G405600 Sobic001G259700--Sobic002G405600 Sobic001G259700--Sobic001G079300 Sobic001G256700 Sobic001G256700 Sobic002G395300--Sobic001G256700 Sobic001G330100 Sobic001G330100 Sobic002G395300--Sobic001G330100 Sobic002G395300--Sobic004G169200 Sobic004G294400 Sobic004G294400 Sobic002G395300--Sobic004G294400 Sobic002G388900 Sobic002G388900 Sobic002G395300--Sobic002G388900 Sobic004G108200 Sobic004G108200 Sobic002G395300--Sobic004G108200 Sobic001G195200 Sobic001G195200 Sobic002G395300--Sobic001G195200 Sobic009G144700 Sobic009G144700 Sobic002G395300--Sobic009G144700 Sobic009G032000 Sobic009G032000 Sobic002G395300--Sobic009G032000 Sobic004G169200--Sobic002G395300 Sobic002G358300 Sobic002G358300 Sobic004G169200--Sobic002G358300 Sobic003G428700 Sobic003G428700 Sobic004G169200--Sobic003G428700 Sobic004G169200--Sobic006G263600 Sobic004G169200--Sobic004G191400 Sobic009G122400 Sobic009G122400 Sobic004G169200--Sobic009G122400 Sobic010G209200 Sobic010G209200 Sobic004G169200--Sobic010G209200 Sobic002G220000 Sobic002G220000 Sobic004G169200--Sobic002G220000 Sobic002G339000 Sobic002G339000 Sobic004G169200--Sobic002G339000 Sobic003G228900 Sobic003G228900 Sobic001G481100--Sobic003G228900 Sobic006G075400 Sobic006G075400 Sobic001G481100--Sobic006G075400 Sobic001G318700 Sobic001G318700 Sobic001G481100--Sobic001G318700 Sobic007G074000 Sobic007G074000 Sobic001G481100--Sobic007G074000 Sobic001G481100--Sobic001G256700 Sobic001G481100--Sobic003G202200 Sobic001G481100--Sobic001G079300 Sobic004G301000 Sobic004G301000 Sobic001G481100--Sobic004G301000 Sobic002G251000 Sobic002G251000 Sobic001G481100--Sobic002G251000
Octagon: transcription factors


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