Gene annotation
Transcriptome id Sobic.004G241100.1
Synonym Sb04g028190
Functional annotation NHL repeat-containing protein, putative, expressed
UniProt C5XYV6
Pfam -
Panther DB PTHR13833 PTHR13833:SF43
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G14890 : NHL domain-containing protein
RAP-DB (Rice) LOC_Os02g50940.1 : NHL repeat-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a051368 , Zm00025a042617 , Zm00025a022015
Brachypodium KQK16803 , KQK01961 , PNT76152 , KQJ93692
Barley HORVU7Hr1G038860.1 , HORVU7Hr1G038860.2 , HORVU7Hr1G038860.3 , HORVU7Hr1G038860.4 , HORVU6Hr1G064000.1 , HORVU6Hr1G076130.1 , HORVU6Hr1G076130.3 , HORVU6Hr1G076130.2 , HORVU6Hr1G076130.5 , HORVU6Hr1G076130.4
Wheat -
Populus -


JBrowse

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cDNA sequences
Sobic.004G241100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G169200 U-box domain-containing protein, putative, expressed -
2 Sobic.003G428700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.006G263600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.009G036000 similar to Hydrophobic protein LTI6B(PubMedID : 29862293)@OsRCI2-6 - Hydrophobic protein LTI6B, expressed -
5 Sobic.001G035100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@ZOS3-21 - C2H2 zinc finger protein, expressed -
6 Sobic.001G259600 tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM domain containing protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
7 Sobic.003G364600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyl hydrolases family 17, putative, expressed -
8 Sobic.003G339500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@spotted leaf 11, putative, expressed -
9 Sobic.010G209200 WRKY28, expressed -
10 Sobic.001G079300 helix-loop-helix DNA-binding domain containing protein, expressed -
11 Sobic.009G200700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@VQ domain containing protein, putative, expressed -
12 Sobic.009G247900 similar to Putative late embryogenesis abundant protein(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@late embryogenesis abundant protein, putative, expressed -
13 Sobic.007G213800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@EF hand family protein, putative, expressed -
14 Sobic.001G391500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
15 Sobic.007G036900 triacylglycerol lipase like protein, putative, expressed -
16 Sobic.001G320900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
17 Sobic.002G395300 gibberellin receptor GID1L2, putative, expressed -
18 Sobic.003G260300 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
19 Sobic.007G074000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@- -
20 Sobic.002G220000 expressed protein -


Gene co-expression network
sample Sobic004G241100 Sobic004G241100 Sobic004G169200 Sobic004G169200 Sobic004G241100--Sobic004G169200 Sobic003G428700 Sobic003G428700 Sobic004G241100--Sobic003G428700 Sobic006G263600 Sobic006G263600 Sobic004G241100--Sobic006G263600 Sobic009G036000 Sobic009G036000 Sobic004G241100--Sobic009G036000 Sobic001G035100 Sobic001G035100 Sobic004G241100--Sobic001G035100 Sobic001G259600 Sobic001G259600 Sobic004G241100--Sobic001G259600 Sobic003G364600 Sobic003G364600 Sobic004G241100--Sobic003G364600 Sobic003G339500 Sobic003G339500 Sobic004G241100--Sobic003G339500 Sobic010G209200 Sobic010G209200 Sobic004G241100--Sobic010G209200 Sobic002G395300 Sobic002G395300 Sobic004G169200--Sobic002G395300 Sobic002G358300 Sobic002G358300 Sobic004G169200--Sobic002G358300 Sobic004G169200--Sobic003G428700 Sobic004G169200--Sobic006G263600 Sobic004G191400 Sobic004G191400 Sobic004G169200--Sobic004G191400 Sobic009G122400 Sobic009G122400 Sobic004G169200--Sobic009G122400 Sobic004G169200--Sobic010G209200 Sobic002G220000 Sobic002G220000 Sobic004G169200--Sobic002G220000 Sobic002G339000 Sobic002G339000 Sobic004G169200--Sobic002G339000 Sobic003G428700--Sobic009G122400 Sobic003G428700--Sobic010G209200 Sobic003G428700--Sobic004G191400 Sobic003G428700--Sobic004G169200 Sobic003G093000 Sobic003G093000 Sobic003G428700--Sobic003G093000 Sobic004G222500 Sobic004G222500 Sobic003G428700--Sobic004G222500 Sobic009G247900 Sobic009G247900 Sobic003G428700--Sobic009G247900 Sobic003G428700--Sobic002G220000 Sobic003G428700--Sobic001G035100 Sobic001G259700 Sobic001G259700 Sobic006G263600--Sobic001G259700 Sobic006G263600--Sobic004G169200 Sobic006G263600--Sobic009G247900 Sobic006G263600--Sobic009G036000 Sobic001G383700 Sobic001G383700 Sobic006G263600--Sobic001G383700 Sobic003G324400 Sobic003G324400 Sobic006G263600--Sobic003G324400 Sobic007G213800 Sobic007G213800 Sobic006G263600--Sobic007G213800 Sobic001G079300 Sobic001G079300 Sobic006G263600--Sobic001G079300 Sobic002G282300 Sobic002G282300 Sobic006G263600--Sobic002G282300 Sobic001G320900 Sobic001G320900 Sobic009G036000--Sobic001G320900 Sobic009G036100 Sobic009G036100 Sobic009G036000--Sobic009G036100 Sobic009G036000--Sobic009G247900 Sobic009G036000--Sobic001G383700 Sobic009G036000--Sobic003G364600 Sobic007G074000 Sobic007G074000 Sobic009G036000--Sobic007G074000 Sobic001G308300 Sobic001G308300 Sobic009G036000--Sobic001G308300 Sobic001G391500 Sobic001G391500 Sobic009G036000--Sobic001G391500 Sobic009G036000--Sobic004G169200 Sobic001G035100--Sobic002G220000 Sobic001G035100--Sobic003G093000 Sobic001G035100--Sobic003G428700 Sobic004G219800 Sobic004G219800 Sobic001G035100--Sobic004G219800 Sobic001G035100--Sobic004G169200 Sobic004G097100 Sobic004G097100 Sobic001G035100--Sobic004G097100 Sobic001G035100--Sobic004G222500 Sobic009G241801 Sobic009G241801 Sobic001G035100--Sobic009G241801 Sobic001G471200 Sobic001G471200 Sobic001G035100--Sobic001G471200 Sobic001G259600--Sobic001G259700 Sobic003G313800 Sobic003G313800 Sobic001G259600--Sobic003G313800 Sobic010G209100 Sobic010G209100 Sobic001G259600--Sobic010G209100 Sobic001G259600--Sobic002G282300 Sobic001G259600--Sobic006G263600 Sobic001G259600--Sobic007G213800 Sobic001G259600--Sobic003G324400 Sobic001G259600--Sobic004G169200 Sobic005G037000 Sobic005G037000 Sobic001G259600--Sobic005G037000 Sobic003G364600--Sobic007G074000 Sobic004G141200 Sobic004G141200 Sobic003G364600--Sobic004G141200 Sobic007G036900 Sobic007G036900 Sobic003G364600--Sobic007G036900 Sobic003G369100 Sobic003G369100 Sobic003G364600--Sobic003G369100 Sobic003G364600--Sobic001G308300 Sobic002G140400 Sobic002G140400 Sobic003G364600--Sobic002G140400 Sobic006G158600 Sobic006G158600 Sobic003G364600--Sobic006G158600 Sobic003G364600--Sobic001G391500 Sobic003G364600--Sobic003G339500 Sobic003G339500--Sobic003G364600 Sobic003G339500--Sobic001G391500 Sobic001G138600 Sobic001G138600 Sobic003G339500--Sobic001G138600 Sobic003G339500--Sobic007G074000 Sobic003G382800 Sobic003G382800 Sobic003G339500--Sobic003G382800 Sobic003G339500--Sobic004G141200 Sobic003G260300 Sobic003G260300 Sobic003G339500--Sobic003G260300 Sobic003G339500--Sobic003G369100 Sobic003G339500--Sobic007G036900 Sobic010G209200--Sobic009G122400 Sobic010G209200--Sobic004G191400 Sobic010G209200--Sobic003G428700 Sobic003G228900 Sobic003G228900 Sobic010G209200--Sobic003G228900 Sobic010G209200--Sobic001G079300 Sobic004G191300 Sobic004G191300 Sobic010G209200--Sobic004G191300 Sobic010G209200--Sobic001G138600 Sobic010G209200--Sobic007G213800 Sobic009G184000 Sobic009G184000 Sobic010G209200--Sobic009G184000
Octagon: transcription factors


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