Gene annotation
Transcriptome id Sobic.001G259600.1
Synonym Sb01g023320, JAZ
Functional annotation tran- scriptional repressor JASMONATE ZIM-DOMAIN (PubMedID : 25711704)
ZIM domain containing protein, putative, expressed
UniProt C5WN77
Pfam PF09425 PF06200
Panther DB PTHR33077 PTHR33077:SF15
NCBI CDD -
KEGG Orthology K13464; jasmonate ZIM domain-containing protein
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G43440 : jasmonate-zim-domain protein 11
RAP-DB (Rice) LOC_Os03g08330.1 : ZIM domain containing protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G259700 tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM domain containing protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
2 Sobic.003G313800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytokinin dehydrogenase precursor, putative, expressed K00279: cytokinin dehydrogenase
3 Sobic.010G209100 WRKY28, expressed -
4 Sobic.002G282300 expressed protein -
5 Sobic.006G263600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.007G213800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@EF hand family protein, putative, expressed -
7 Sobic.003G324400 Not investigated(PubMedID : 23766026)@Contribute to rice salt tolerance under a salt inducible abscisic acid 2 (ABA2) promoter(PubMedID : 28393269)@AP2 domain containing protein, expressed -
8 Sobic.004G169200 U-box domain-containing protein, putative, expressed -
9 Sobic.005G037000 cytochrome P450, putative, expressed -
10 Sobic.002G036100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@zinc-finger protein, putative, expressed -
11 Sobic.003G428700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
12 Sobic.007G077200 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
13 Sobic.001G077400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed K01723: hydroperoxide dehydratase
14 Sobic.002G174200 WRKY74, expressed -
15 Sobic.009G036100 similar to Hydrophobic protein LTI6B(PubMedID : 29862293)@OsRCI2-6 - Hydrophobic protein LTI6B, expressed -
16 Sobic.010G209200 WRKY28, expressed -
17 Sobic.006G165100 Trihelix Family(PubMedID : 24864043)@transcription factor like protein, putative, expressed -
18 Sobic.002G189100 beta-glucan-binding protein 4, putative, expressed K01180: endo-1,3(4)-beta-glucanase
19 Sobic.002G140300 plastocyanin-like domain containing protein, putative, expressed -
20 Sobic.001G040200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NAC domain-containing protein 67, putative, expressed -


Gene co-expression network
sample Sobic001G259600 Sobic001G259600 Sobic001G259700 Sobic001G259700 Sobic001G259600--Sobic001G259700 Sobic003G313800 Sobic003G313800 Sobic001G259600--Sobic003G313800 Sobic010G209100 Sobic010G209100 Sobic001G259600--Sobic010G209100 Sobic002G282300 Sobic002G282300 Sobic001G259600--Sobic002G282300 Sobic006G263600 Sobic006G263600 Sobic001G259600--Sobic006G263600 Sobic007G213800 Sobic007G213800 Sobic001G259600--Sobic007G213800 Sobic003G324400 Sobic003G324400 Sobic001G259600--Sobic003G324400 Sobic004G169200 Sobic004G169200 Sobic001G259600--Sobic004G169200 Sobic005G037000 Sobic005G037000 Sobic001G259600--Sobic005G037000 Sobic001G259700--Sobic006G263600 Sobic009G141500 Sobic009G141500 Sobic001G259700--Sobic009G141500 Sobic001G259700--Sobic001G259600 Sobic002G328400 Sobic002G328400 Sobic001G259700--Sobic002G328400 Sobic001G259700--Sobic004G169200 Sobic004G191400 Sobic004G191400 Sobic001G259700--Sobic004G191400 Sobic001G449700 Sobic001G449700 Sobic001G259700--Sobic001G449700 Sobic002G405600 Sobic002G405600 Sobic001G259700--Sobic002G405600 Sobic001G079300 Sobic001G079300 Sobic001G259700--Sobic001G079300 Sobic003G313800--Sobic001G259600 Sobic009G179500 Sobic009G179500 Sobic003G313800--Sobic009G179500 Sobic003G313800--Sobic007G213800 Sobic003G313800--Sobic002G282300 Sobic003G313800--Sobic003G324400 Sobic002G036100 Sobic002G036100 Sobic003G313800--Sobic002G036100 Sobic001G077400 Sobic001G077400 Sobic003G313800--Sobic001G077400 Sobic006G165100 Sobic006G165100 Sobic003G313800--Sobic006G165100 Sobic003G313800--Sobic005G037000 Sobic010G209100--Sobic001G259600 Sobic001G341600 Sobic001G341600 Sobic010G209100--Sobic001G341600 Sobic010G209100--Sobic001G077400 Sobic007G077200 Sobic007G077200 Sobic010G209100--Sobic007G077200 Sobic010G209100--Sobic002G036100 Sobic004G280900 Sobic004G280900 Sobic010G209100--Sobic004G280900 Sobic005G109000 Sobic005G109000 Sobic010G209100--Sobic005G109000 Sobic002G140300 Sobic002G140300 Sobic010G209100--Sobic002G140300 Sobic009G217500 Sobic009G217500 Sobic010G209100--Sobic009G217500 Sobic006G230900 Sobic006G230900 Sobic002G282300--Sobic006G230900 Sobic002G282300--Sobic007G213800 Sobic001G205350 Sobic001G205350 Sobic002G282300--Sobic001G205350 Sobic001G338600 Sobic001G338600 Sobic002G282300--Sobic001G338600 Sobic003G144700 Sobic003G144700 Sobic002G282300--Sobic003G144700 Sobic003G197200 Sobic003G197200 Sobic002G282300--Sobic003G197200 Sobic006G231200 Sobic006G231200 Sobic002G282300--Sobic006G231200 Sobic001G320900 Sobic001G320900 Sobic002G282300--Sobic001G320900 Sobic002G282300--Sobic004G169200 Sobic006G263600--Sobic001G259700 Sobic006G263600--Sobic004G169200 Sobic009G247900 Sobic009G247900 Sobic006G263600--Sobic009G247900 Sobic009G036000 Sobic009G036000 Sobic006G263600--Sobic009G036000 Sobic001G383700 Sobic001G383700 Sobic006G263600--Sobic001G383700 Sobic006G263600--Sobic003G324400 Sobic006G263600--Sobic007G213800 Sobic006G263600--Sobic001G079300 Sobic006G263600--Sobic002G282300 Sobic007G213800--Sobic003G144700 Sobic001G391500 Sobic001G391500 Sobic007G213800--Sobic001G391500 Sobic007G213800--Sobic002G282300 Sobic007G213800--Sobic006G230900 Sobic007G213800--Sobic003G197200 Sobic001G138600 Sobic001G138600 Sobic007G213800--Sobic001G138600 Sobic007G213800--Sobic006G231200 Sobic010G209200 Sobic010G209200 Sobic007G213800--Sobic010G209200 Sobic001G459800 Sobic001G459800 Sobic007G213800--Sobic001G459800 Sobic003G324400--Sobic006G165100 Sobic001G040200 Sobic001G040200 Sobic003G324400--Sobic001G040200 Sobic003G324400--Sobic002G140300 Sobic009G036100 Sobic009G036100 Sobic003G324400--Sobic009G036100 Sobic003G324400--Sobic006G263600 Sobic003G324400--Sobic009G247900 Sobic003G324400--Sobic002G405600 Sobic003G324400--Sobic003G313800 Sobic003G324400--Sobic002G282300 Sobic002G395300 Sobic002G395300 Sobic004G169200--Sobic002G395300 Sobic002G358300 Sobic002G358300 Sobic004G169200--Sobic002G358300 Sobic003G428700 Sobic003G428700 Sobic004G169200--Sobic003G428700 Sobic004G169200--Sobic006G263600 Sobic004G169200--Sobic004G191400 Sobic009G122400 Sobic009G122400 Sobic004G169200--Sobic009G122400 Sobic004G169200--Sobic010G209200 Sobic002G220000 Sobic002G220000 Sobic004G169200--Sobic002G220000 Sobic002G339000 Sobic002G339000 Sobic004G169200--Sobic002G339000 Sobic005G037000--Sobic001G077400 Sobic005G037000--Sobic004G280900 Sobic001G441100 Sobic001G441100 Sobic005G037000--Sobic001G441100 Sobic001G035000 Sobic001G035000 Sobic005G037000--Sobic001G035000 Sobic001G209800 Sobic001G209800 Sobic005G037000--Sobic001G209800 Sobic009G217600 Sobic009G217600 Sobic005G037000--Sobic009G217600 Sobic007G126300 Sobic007G126300 Sobic005G037000--Sobic007G126300 Sobic005G037000--Sobic001G259600 Sobic005G037000--Sobic006G165100
Octagon: transcription factors


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