Gene annotation
Transcriptome id Sobic.003G230100.1
Synonym Sb03g028810
Functional annotation expressed protein
UniProt C5XEG5
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os01g44120.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium KQK08866
Barley -
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G097100 F-box family protein, putative, expressed -
2 Sobic.002G184300 heat shock protein DnaJ, putative, expressed -
3 Sobic.004G219800 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
4 Sobic.002G395300 gibberellin receptor GID1L2, putative, expressed -
5 Sobic.006G216700 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@expressed protein -
6 Sobic.004G169200 U-box domain-containing protein, putative, expressed -
7 Sobic.009G032000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
8 Sobic.002G358300 expressed protein -
9 Sobic.002G220000 expressed protein -
10 Sobic.001G100501 - -
11 Sobic.002G388900 Upregulated in cold tolerant sorghum under stress(PubMedID : 26645959)@cytochrome P450 72A1, putative, expressed -
12 Sobic.009G241801 - -
13 Sobic.004G308900 AP2 domain containing protein, expressed -
14 Sobic.001G330100 ZOS3-12 - C2H2 zinc finger protein, expressed -
15 Sobic.001G035100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@ZOS3-21 - C2H2 zinc finger protein, expressed -
16 Sobic.001G256700 cystathionine gamma-synthase, putative, expressed K01739: cystathionine gamma-synthase
17 Sobic.004G246600 expressed protein -
18 Sobic.001G330200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ZOS3-12 - C2H2 zinc finger protein, expressed -
19 Sobic.001G330400 ZOS3-11 - C2H2 zinc finger protein, expressed -
20 Sobic.008G187001 - K09422: transcription factor MYB, plant


Gene co-expression network
sample Sobic003G230100 Sobic003G230100 Sobic004G097100 Sobic004G097100 Sobic003G230100--Sobic004G097100 Sobic002G184300 Sobic002G184300 Sobic003G230100--Sobic002G184300 Sobic004G219800 Sobic004G219800 Sobic003G230100--Sobic004G219800 Sobic002G395300 Sobic002G395300 Sobic003G230100--Sobic002G395300 Sobic006G216700 Sobic006G216700 Sobic003G230100--Sobic006G216700 Sobic004G169200 Sobic004G169200 Sobic003G230100--Sobic004G169200 Sobic009G032000 Sobic009G032000 Sobic003G230100--Sobic009G032000 Sobic002G358300 Sobic002G358300 Sobic003G230100--Sobic002G358300 Sobic002G220000 Sobic002G220000 Sobic003G230100--Sobic002G220000 Sobic004G097100--Sobic003G230100 Sobic004G229500 Sobic004G229500 Sobic004G097100--Sobic004G229500 Sobic004G246600 Sobic004G246600 Sobic004G097100--Sobic004G246600 Sobic006G187900 Sobic006G187900 Sobic004G097100--Sobic006G187900 Sobic009G241801 Sobic009G241801 Sobic004G097100--Sobic009G241801 Sobic005G013500 Sobic005G013500 Sobic004G097100--Sobic005G013500 Sobic002G388900 Sobic002G388900 Sobic004G097100--Sobic002G388900 Sobic004G308900 Sobic004G308900 Sobic004G097100--Sobic004G308900 Sobic004G097100--Sobic002G184300 Sobic001G363400 Sobic001G363400 Sobic002G184300--Sobic001G363400 Sobic002G184300--Sobic003G230100 Sobic002G184300--Sobic002G358300 Sobic002G184300--Sobic004G097100 Sobic002G184300--Sobic009G032000 Sobic009G205500 Sobic009G205500 Sobic002G184300--Sobic009G205500 Sobic002G184300--Sobic004G246600 Sobic002G184300--Sobic005G013500 Sobic002G184300--Sobic004G308900 Sobic001G256700 Sobic001G256700 Sobic004G219800--Sobic001G256700 Sobic001G330100 Sobic001G330100 Sobic004G219800--Sobic001G330100 Sobic004G352000 Sobic004G352000 Sobic004G219800--Sobic004G352000 Sobic001G330400 Sobic001G330400 Sobic004G219800--Sobic001G330400 Sobic004G219800--Sobic009G032000 Sobic008G187001 Sobic008G187001 Sobic004G219800--Sobic008G187001 Sobic004G219800--Sobic002G388900 Sobic007G017500 Sobic007G017500 Sobic004G219800--Sobic007G017500 Sobic006G075400 Sobic006G075400 Sobic004G219800--Sobic006G075400 Sobic002G395300--Sobic001G256700 Sobic002G395300--Sobic001G330100 Sobic002G395300--Sobic004G169200 Sobic004G294400 Sobic004G294400 Sobic002G395300--Sobic004G294400 Sobic002G395300--Sobic002G388900 Sobic004G108200 Sobic004G108200 Sobic002G395300--Sobic004G108200 Sobic001G195200 Sobic001G195200 Sobic002G395300--Sobic001G195200 Sobic009G144700 Sobic009G144700 Sobic002G395300--Sobic009G144700 Sobic002G395300--Sobic009G032000 Sobic006G216700--Sobic003G230100 Sobic006G216700--Sobic004G169200 Sobic001G449700 Sobic001G449700 Sobic006G216700--Sobic001G449700 Sobic006G216700--Sobic002G395300 Sobic001G100501 Sobic001G100501 Sobic006G216700--Sobic001G100501 Sobic006G216700--Sobic004G097100 Sobic003G037500 Sobic003G037500 Sobic006G216700--Sobic003G037500 Sobic006G216700--Sobic004G219800 Sobic003G349600 Sobic003G349600 Sobic006G216700--Sobic003G349600 Sobic004G169200--Sobic002G395300 Sobic004G169200--Sobic002G358300 Sobic003G428700 Sobic003G428700 Sobic004G169200--Sobic003G428700 Sobic006G263600 Sobic006G263600 Sobic004G169200--Sobic006G263600 Sobic004G191400 Sobic004G191400 Sobic004G169200--Sobic004G191400 Sobic009G122400 Sobic009G122400 Sobic004G169200--Sobic009G122400 Sobic010G209200 Sobic010G209200 Sobic004G169200--Sobic010G209200 Sobic004G169200--Sobic002G220000 Sobic002G339000 Sobic002G339000 Sobic004G169200--Sobic002G339000 Sobic009G032000--Sobic001G256700 Sobic009G032000--Sobic002G388900 Sobic009G032000--Sobic004G219800 Sobic009G032000--Sobic002G358300 Sobic009G032000--Sobic004G308900 Sobic009G032000--Sobic004G246600 Sobic009G032000--Sobic001G330100 Sobic009G032000--Sobic005G013500 Sobic009G032000--Sobic002G395300 Sobic002G358300--Sobic004G308900 Sobic007G122800 Sobic007G122800 Sobic002G358300--Sobic007G122800 Sobic002G358300--Sobic001G195200 Sobic002G358300--Sobic009G032000 Sobic002G358300--Sobic004G191400 Sobic002G358300--Sobic004G169200 Sobic004G191300 Sobic004G191300 Sobic002G358300--Sobic004G191300 Sobic002G358300--Sobic002G395300 Sobic002G358300--Sobic004G294400 Sobic003G093000 Sobic003G093000 Sobic002G220000--Sobic003G093000 Sobic001G035100 Sobic001G035100 Sobic002G220000--Sobic001G035100 Sobic002G220000--Sobic001G330400 Sobic002G220000--Sobic003G428700 Sobic003G092900 Sobic003G092900 Sobic002G220000--Sobic003G092900 Sobic002G220000--Sobic009G122400 Sobic002G220000--Sobic004G169200 Sobic002G189100 Sobic002G189100 Sobic002G220000--Sobic002G189100 Sobic002G220000--Sobic004G219800
Octagon: transcription factors


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