Gene annotation
| Transcriptome id | Sobic.003G102200.1 |
|---|---|
| Synonym | Sb03g008560 |
| Functional annotation | helix-loop-helix DNA-binding domain containing protein, expressed |
| UniProt | C5XEZ0 |
| Pfam | PF00010 |
| Panther DB | PTHR13935 PTHR13935:SF59 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | GO:0003677; DNA binding |
Orthologs (automatic annotation)
| TAIR | AT4G20970 : basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os01g01870.1 : helix-loop-helix DNA-binding domain containing protein, expressed |
| MaizeGDB (Corn) | Zm00025a023787 |
| Brachypodium | KQK02311 |
| Barley | HORVU3Hr1G000150.5 , HORVU3Hr1G000150.4 , HORVU3Hr1G000150.3 , HORVU3Hr1G000150.2 , HORVU3Hr1G000150.1 , HORVU3Hr1G000160.10 , HORVU3Hr1G000160.11 , HORVU3Hr1G000160.12 , HORVU3Hr1G000160.6 , HORVU3Hr1G000160.7 , HORVU3Hr1G000160.4 , HORVU3Hr1G000160.5 , HORVU3Hr1G000160.2 , HORVU3Hr1G000160.3 , HORVU3Hr1G000160.1 , HORVU3Hr1G000160.8 , HORVU3Hr1G000160.9 |
| Wheat | TraesCS3B02G002300 , TraesCS3A02G000400 , TraesCS3D02G008900 , TraesCS3D02G009200 , TraesCS3A02G000600 , TraesCS3B02G003500 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
 |
Find similar expressed genes
 |
| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G449700 | highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@cytochrome P450, putative, expressed | K01723: hydroperoxide dehydratase |
| 2 | Sobic.003G110200 | NADP-dependent oxidoreductase, putative, expressed | K07119: PTGR3, prostaglandin reductase 3 |
| 3 | Sobic.001G195100 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed | - |
| 4 | Sobic.001G259700 | tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM domain containing protein, putative, expressed | K13464: jasmonate ZIM domain-containing protein |
| 5 | Sobic.001G383700 | OsCML27 - Calmodulin-related calcium sensor protein, expressed | K13448: calcium-binding protein CML |
| 6 | Sobic.007G149300 | expressed protein | - |
| 7 | Sobic.002G342400 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@cytochrome P450 51, putative, expressed | K05917: sterol 14alpha-demethylase |
| 8 | Sobic.002G373001 | - | - |
| 9 | Sobic.003G250600 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OsGrx_I1 - glutaredoxin subgroup III, expressed | - |
| 10 | Sobic.005G109000 | cytochrome P450, putative, expressed | - |
| 11 | Sobic.010G267600 | similar to Putative senescence-associated protein(PubMedID : 29862293)@senescence-associated protein, putative, expressed | - |
| 12 | Sobic.002G092801 | - | - |
| 13 | Sobic.003G202200 | uncharacterized protein PA4923, putative, expressed | K06966: pyrimidine/purine-5'-nucleotide nucleosidase |
| 14 | Sobic.003G082600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsCML16 - Calmodulin-related calcium sensor protein, expressed | K13448: calcium-binding protein CML |
| 15 | Sobic.003G254900 | no apical meristem protein, putative, expressed | - |
| 16 | Sobic.002G328400 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@TKL_IRAK_DUF26-lc.15 - DUF26 kinases have homology to DUF26 containing loci, expressed | - |
| 17 | Sobic.002G377100 | DUF1645 domain containing protein, putative, expressed | - |
| 18 | Sobic.007G123300 | C1-like domain containing protein, expressed | - |
| 19 | Sobic.002G405600 | early response to dehydration 15, putative, expressed | - |
| 20 | Sobic.002G403300 | expressed protein | - |
Gene co-expression network
Octagon: transcription factors
© 2015- RIKEN, All rights reserved.
