Gene annotation
Transcriptome id Sobic.003G082600.1
Synonym Sb03g006930, CML23
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
OsCML16 - Calmodulin-related calcium sensor protein, expressed
UniProt C5XQS6
Pfam PF13499
Panther DB PTHR10891 PTHR10891:SF590
NCBI CDD KOG0027; Calmodulin and related proteins (EF-Hand superfamily)
KEGG Orthology K13448; calcium-binding protein CML
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G66400 : calmodulin like 23
RAP-DB (Rice) LOC_Os01g04330.1 : OsCML16 - Calmodulin-related calcium sensor protein, expressed
MaizeGDB (Corn) Zm00025a023569 , Zm00025a035576
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.003G082600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G267600 similar to Putative senescence-associated protein(PubMedID : 29862293)@senescence-associated protein, putative, expressed -
2 Sobic.002G245800 AN1-like zinc finger domain containing protein, expressed -
3 Sobic.002G405600 early response to dehydration 15, putative, expressed -
4 Sobic.003G092900 expressed protein -
5 Sobic.005G109000 cytochrome P450, putative, expressed -
6 Sobic.003G202200 uncharacterized protein PA4923, putative, expressed K06966: pyrimidine/purine-5'-nucleotide nucleosidase
7 Sobic.001G259700 tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM domain containing protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
8 Sobic.003G102200 helix-loop-helix DNA-binding domain containing protein, expressed -
9 Sobic.003G021500 sodium/calcium exchanger protein, putative, expressed -
10 Sobic.001G234800 inorganic phosphate transporter, putative, expressed K08176: MFS transporter, PHS family, inorganic phosphate transporter
11 Sobic.009G023200 glycine-rich protein A3, putative, expressed -
12 Sobic.006G158266 - -
13 Sobic.010G204600 SNF7 domain containing protein, putative, expressed K12197: CHMP1, VPS46, charged multivesicular body protein 1
14 Sobic.009G247900 similar to Putative late embryogenesis abundant protein(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@late embryogenesis abundant protein, putative, expressed -
15 Sobic.002G373001 - -
16 Sobic.001G449700 highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@cytochrome P450, putative, expressed K01723: hydroperoxide dehydratase
17 Sobic.002G214800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@zinc-finger protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
18 Sobic.001G040200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NAC domain-containing protein 67, putative, expressed -
19 Sobic.001G259900 tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM domain containing protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
20 Sobic.001G247300 "Ca ATPase, IIB type"(PubMedID : 22196357)@SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@calcium-transporting ATPase, plasma membrane-type, putative, expressed K01537: P-type Ca2+ transporter type 2C


Gene co-expression network
sample Sobic003G082600 Sobic003G082600 Sobic010G267600 Sobic010G267600 Sobic003G082600--Sobic010G267600 Sobic002G245800 Sobic002G245800 Sobic003G082600--Sobic002G245800 Sobic002G405600 Sobic002G405600 Sobic003G082600--Sobic002G405600 Sobic003G092900 Sobic003G092900 Sobic003G082600--Sobic003G092900 Sobic005G109000 Sobic005G109000 Sobic003G082600--Sobic005G109000 Sobic003G202200 Sobic003G202200 Sobic003G082600--Sobic003G202200 Sobic001G259700 Sobic001G259700 Sobic003G082600--Sobic001G259700 Sobic003G102200 Sobic003G102200 Sobic003G082600--Sobic003G102200 Sobic003G021500 Sobic003G021500 Sobic003G082600--Sobic003G021500 Sobic010G267600--Sobic003G202200 Sobic010G267600--Sobic003G092900 Sobic007G149300 Sobic007G149300 Sobic010G267600--Sobic007G149300 Sobic010G267600--Sobic002G405600 Sobic001G383700 Sobic001G383700 Sobic010G267600--Sobic001G383700 Sobic009G247900 Sobic009G247900 Sobic010G267600--Sobic009G247900 Sobic001G449700 Sobic001G449700 Sobic010G267600--Sobic001G449700 Sobic010G204600 Sobic010G204600 Sobic010G267600--Sobic010G204600 Sobic010G267600--Sobic001G259700 Sobic002G245800--Sobic002G405600 Sobic001G040200 Sobic001G040200 Sobic002G245800--Sobic001G040200 Sobic003G324400 Sobic003G324400 Sobic002G245800--Sobic003G324400 Sobic002G245800--Sobic009G247900 Sobic001G422900 Sobic001G422900 Sobic002G245800--Sobic001G422900 Sobic009G023200 Sobic009G023200 Sobic002G245800--Sobic009G023200 Sobic001G095300 Sobic001G095300 Sobic002G245800--Sobic001G095300 Sobic002G140300 Sobic002G140300 Sobic002G245800--Sobic002G140300 Sobic006G179500 Sobic006G179500 Sobic002G245800--Sobic006G179500 Sobic002G405600--Sobic002G245800 Sobic002G405600--Sobic003G324400 Sobic002G405600--Sobic003G202200 Sobic002G405600--Sobic010G204600 Sobic002G405600--Sobic009G247900 Sobic002G405600--Sobic010G267600 Sobic006G263600 Sobic006G263600 Sobic002G405600--Sobic006G263600 Sobic002G405600--Sobic001G259700 Sobic002G405600--Sobic001G095300 Sobic003G093000 Sobic003G093000 Sobic003G092900--Sobic003G093000 Sobic004G222500 Sobic004G222500 Sobic003G092900--Sobic004G222500 Sobic002G220000 Sobic002G220000 Sobic003G092900--Sobic002G220000 Sobic001G247300 Sobic001G247300 Sobic003G092900--Sobic001G247300 Sobic003G092900--Sobic002G140300 Sobic003G430400 Sobic003G430400 Sobic003G092900--Sobic003G430400 Sobic003G092900--Sobic009G247900 Sobic001G267600 Sobic001G267600 Sobic003G092900--Sobic001G267600 Sobic002G189100 Sobic002G189100 Sobic003G092900--Sobic002G189100 Sobic010G209100 Sobic010G209100 Sobic005G109000--Sobic010G209100 Sobic002G214800 Sobic002G214800 Sobic005G109000--Sobic002G214800 Sobic002G202100 Sobic002G202100 Sobic005G109000--Sobic002G202100 Sobic007G151100 Sobic007G151100 Sobic005G109000--Sobic007G151100 Sobic005G109000--Sobic002G245800 Sobic005G109000--Sobic010G267600 Sobic001G259600 Sobic001G259600 Sobic005G109000--Sobic001G259600 Sobic010G083600 Sobic010G083600 Sobic005G109000--Sobic010G083600 Sobic005G109000--Sobic001G449700 Sobic001G481100 Sobic001G481100 Sobic003G202200--Sobic001G481100 Sobic003G202200--Sobic009G247900 Sobic003G202200--Sobic001G383700 Sobic003G202200--Sobic001G449700 Sobic003G202200--Sobic003G021500 Sobic003G228900 Sobic003G228900 Sobic003G202200--Sobic003G228900 Sobic004G191400 Sobic004G191400 Sobic003G202200--Sobic004G191400 Sobic003G364600 Sobic003G364600 Sobic003G202200--Sobic003G364600 Sobic009G036000 Sobic009G036000 Sobic003G202200--Sobic009G036000 Sobic001G259700--Sobic006G263600 Sobic009G141500 Sobic009G141500 Sobic001G259700--Sobic009G141500 Sobic001G259700--Sobic001G259600 Sobic002G328400 Sobic002G328400 Sobic001G259700--Sobic002G328400 Sobic004G169200 Sobic004G169200 Sobic001G259700--Sobic004G169200 Sobic001G259700--Sobic004G191400 Sobic001G259700--Sobic001G449700 Sobic001G259700--Sobic002G405600 Sobic001G079300 Sobic001G079300 Sobic001G259700--Sobic001G079300 Sobic003G102200--Sobic001G449700 Sobic003G110200 Sobic003G110200 Sobic003G102200--Sobic003G110200 Sobic001G195100 Sobic001G195100 Sobic003G102200--Sobic001G195100 Sobic003G102200--Sobic001G259700 Sobic003G102200--Sobic001G383700 Sobic003G102200--Sobic007G149300 Sobic002G342400 Sobic002G342400 Sobic003G102200--Sobic002G342400 Sobic002G373001 Sobic002G373001 Sobic003G102200--Sobic002G373001 Sobic003G250600 Sobic003G250600 Sobic003G102200--Sobic003G250600 Sobic003G021500--Sobic003G364600 Sobic003G021500--Sobic003G202200 Sobic003G021500--Sobic001G449700 Sobic003G021500--Sobic009G036000 Sobic003G320800 Sobic003G320800 Sobic003G021500--Sobic003G320800 Sobic003G021500--Sobic001G383700 Sobic002G034500 Sobic002G034500 Sobic003G021500--Sobic002G034500 Sobic002G082600 Sobic002G082600 Sobic003G021500--Sobic002G082600 Sobic002G312400 Sobic002G312400 Sobic003G021500--Sobic002G312400
Octagon: transcription factors


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