Gene annotation
Transcriptome id Sobic.004G297100.1
Synonym SbERF54, ATERF-1, Sb04g033105, ethylene response factor 54, ERF-1
Functional annotation Not investigated (PubMedID : 23766026)
ethylene-responsive transcription factor, putative, expressed
UniProt C5XS01
Pfam PF00847
Panther DB PTHR31190 PTHR31190:SF30
NCBI CDD -
KEGG Orthology K09286; EREBP-like factor
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT4G17500 : ethylene responsive element binding factor 1
RAP-DB (Rice) LOC_Os02g43790.1 : ethylene-responsive transcription factor, putative, expressed
MaizeGDB (Corn) Zm00025a032190 , Zm00025a056885 , Zm00025a009134 , Zm00025a020895 , Zm00025a011662 , Zm00025a038708 , Zm00025a043372
Brachypodium KQJ83906 , KQJ83907 , KQK23628 , KQJ91651 , KQK00588 , KQK00586
Barley HORVU6Hr1G062430.1 , HORVU2Hr1G098330.2 , HORVU2Hr1G098330.1 , HORVU6Hr1G062380.3 , HORVU6Hr1G062380.2 , HORVU6Hr1G062380.1 , HORVU6Hr1G062380.5 , HORVU6Hr1G062380.4 , HORVU1Hr1G055710.1 , HORVU1Hr1G055710.3 , HORVU4Hr1G080300.1 , HORVU3Hr1G059250.2 , HORVU3Hr1G059250.1
Wheat -
Populus -


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cDNA sequences
Sobic.004G297100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G059400 acetyltransferase, GNAT family, putative, expressed -
2 Sobic.001G195100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
3 Sobic.002G199500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CaM - probable calciumbinding protein CML45(PubMedID : 31721651)@EF hand family protein, putative, expressed K02183: calmodulin
4 Sobic.010G102000 U-box protein CMPG1, putative, expressed -
5 Sobic.010G075600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
6 Sobic.007G090300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.008G188000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@VQ domain containing protein, putative, expressed -
8 Sobic.002G232800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@zinc finger, C3HC4 type domain containing protein, expressed K10664: E3 ubiquitin-protein ligase ATL6/9/15/31/42/55
9 Sobic.007G118301 - -
10 Sobic.009G100500 WRKY53, expressed K13424: WRKY transcription factor 33
11 Sobic.001G146400 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsSAUR16 - Auxin-responsive SAUR gene family member, expressed -
12 Sobic.001G064900 syntaxin, putative, expressed K08486: syntaxin 1B/2/3
13 Sobic.010G083600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF1645 domain containing protein, putative, expressed -
14 Sobic.006G259000 AP2 domain containing protein, expressed K09286: EREBP-like factor
15 Sobic.003G277500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methyltransferase, putative, expressed -
16 Sobic.005G080200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Ser/Thr protein phosphatase family protein, putative, expressed -
17 Sobic.010G209100 WRKY28, expressed -
18 Sobic.006G257700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@heavy metal transport/detoxification protein, putative, expressed -
19 Sobic.005G109000 cytochrome P450, putative, expressed -
20 Sobic.002G377100 DUF1645 domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic004G297100 Sobic004G297100 Sobic001G059400 Sobic001G059400 Sobic004G297100--Sobic001G059400 Sobic001G195100 Sobic001G195100 Sobic004G297100--Sobic001G195100 Sobic002G199500 Sobic002G199500 Sobic004G297100--Sobic002G199500 Sobic010G102000 Sobic010G102000 Sobic004G297100--Sobic010G102000 Sobic010G075600 Sobic010G075600 Sobic004G297100--Sobic010G075600 Sobic007G090300 Sobic007G090300 Sobic004G297100--Sobic007G090300 Sobic008G188000 Sobic008G188000 Sobic004G297100--Sobic008G188000 Sobic002G232800 Sobic002G232800 Sobic004G297100--Sobic002G232800 Sobic007G118301 Sobic007G118301 Sobic004G297100--Sobic007G118301 Sobic001G059400--Sobic004G297100 Sobic010G083600 Sobic010G083600 Sobic001G059400--Sobic010G083600 Sobic001G059400--Sobic002G199500 Sobic001G059400--Sobic007G090300 Sobic010G102150 Sobic010G102150 Sobic001G059400--Sobic010G102150 Sobic001G059400--Sobic001G195100 Sobic002G377100 Sobic002G377100 Sobic001G059400--Sobic002G377100 Sobic010G163000 Sobic010G163000 Sobic001G059400--Sobic010G163000 Sobic001G059400--Sobic008G188000 Sobic001G314800 Sobic001G314800 Sobic001G195100--Sobic001G314800 Sobic003G102200 Sobic003G102200 Sobic001G195100--Sobic003G102200 Sobic001G195100--Sobic004G297100 Sobic001G195100--Sobic001G059400 Sobic001G195100--Sobic007G118301 Sobic001G195100--Sobic007G090300 Sobic005G109000 Sobic005G109000 Sobic001G195100--Sobic005G109000 Sobic001G088300 Sobic001G088300 Sobic001G195100--Sobic001G088300 Sobic003G296300 Sobic003G296300 Sobic001G195100--Sobic003G296300 Sobic001G146400 Sobic001G146400 Sobic002G199500--Sobic001G146400 Sobic002G199500--Sobic001G059400 Sobic002G199500--Sobic007G090300 Sobic002G199500--Sobic004G297100 Sobic009G100500 Sobic009G100500 Sobic002G199500--Sobic009G100500 Sobic009G010400 Sobic009G010400 Sobic002G199500--Sobic009G010400 Sobic001G064900 Sobic001G064900 Sobic002G199500--Sobic001G064900 Sobic006G259000 Sobic006G259000 Sobic002G199500--Sobic006G259000 Sobic002G199500--Sobic010G102000 Sobic009G217500 Sobic009G217500 Sobic010G102000--Sobic009G217500 Sobic010G105300 Sobic010G105300 Sobic010G102000--Sobic010G105300 Sobic003G341100 Sobic003G341100 Sobic010G102000--Sobic003G341100 Sobic010G102000--Sobic002G232800 Sobic010G102000--Sobic001G064900 Sobic007G145700 Sobic007G145700 Sobic010G102000--Sobic007G145700 Sobic010G023200 Sobic010G023200 Sobic010G102000--Sobic010G023200 Sobic007G077100 Sobic007G077100 Sobic010G102000--Sobic007G077100 Sobic006G273800 Sobic006G273800 Sobic010G102000--Sobic006G273800 Sobic010G075600--Sobic004G297100 Sobic005G080200 Sobic005G080200 Sobic010G075600--Sobic005G080200 Sobic007G123300 Sobic007G123300 Sobic010G075600--Sobic007G123300 Sobic006G216700 Sobic006G216700 Sobic010G075600--Sobic006G216700 Sobic009G221400 Sobic009G221400 Sobic010G075600--Sobic009G221400 Sobic003G339500 Sobic003G339500 Sobic010G075600--Sobic003G339500 Sobic001G454100 Sobic001G454100 Sobic010G075600--Sobic001G454100 Sobic003G285500 Sobic003G285500 Sobic010G075600--Sobic003G285500 Sobic003G277500 Sobic003G277500 Sobic010G075600--Sobic003G277500 Sobic007G090300--Sobic009G100500 Sobic007G090300--Sobic006G259000 Sobic007G090300--Sobic002G199500 Sobic007G090300--Sobic001G059400 Sobic007G090300--Sobic010G102000 Sobic003G352400 Sobic003G352400 Sobic007G090300--Sobic003G352400 Sobic007G090300--Sobic002G232800 Sobic002G138700 Sobic002G138700 Sobic007G090300--Sobic002G138700 Sobic007G090300--Sobic003G341100 Sobic008G188000--Sobic004G297100 Sobic008G188000--Sobic001G059400 Sobic008G188000--Sobic003G277500 Sobic004G101000 Sobic004G101000 Sobic008G188000--Sobic004G101000 Sobic006G265000 Sobic006G265000 Sobic008G188000--Sobic006G265000 Sobic004G140000 Sobic004G140000 Sobic008G188000--Sobic004G140000 Sobic008G188000--Sobic001G195100 Sobic008G188000--Sobic002G377100 Sobic004G195000 Sobic004G195000 Sobic008G188000--Sobic004G195000 Sobic002G232800--Sobic010G102000 Sobic002G232800--Sobic003G341100 Sobic002G232800--Sobic009G217500 Sobic001G341600 Sobic001G341600 Sobic002G232800--Sobic001G341600 Sobic002G232800--Sobic007G077100 Sobic002G232800--Sobic010G023200 Sobic010G071000 Sobic010G071000 Sobic002G232800--Sobic010G071000 Sobic010G209100 Sobic010G209100 Sobic002G232800--Sobic010G209100 Sobic002G232800--Sobic007G090300 Sobic001G100501 Sobic001G100501 Sobic007G118301--Sobic001G100501 Sobic009G136400 Sobic009G136400 Sobic007G118301--Sobic009G136400 Sobic007G118301--Sobic006G259000 Sobic007G118301--Sobic001G195100 Sobic003G207900 Sobic003G207900 Sobic007G118301--Sobic003G207900 Sobic007G118301--Sobic006G216700 Sobic001G295700 Sobic001G295700 Sobic007G118301--Sobic001G295700 Sobic007G118301--Sobic010G105300 Sobic003G230100 Sobic003G230100 Sobic007G118301--Sobic003G230100
Octagon: transcription factors


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