Gene annotation
Transcriptome id Sobic.001G146400.1
Synonym Sb01g012780, SbSAUR3, small auxin up RNA, SbSAUR3;small auxin up RNA
Functional annotation "domain confirmed by Pfam database, expression not supported" (PubMedID : 20499123)
SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
OsSAUR16 - Auxin-responsive SAUR gene family member, expressed
UniProt C5WQE9
Pfam PF02519
Panther DB PTHR31374 PTHR31374:SF50
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0009733; response to auxin


Orthologs (automatic annotation)
TAIR AT4G22620 : SAUR-like auxin-responsive protein family
RAP-DB (Rice) LOC_Os03g45850.1 : OsSAUR16 - Auxin-responsive SAUR gene family member, expressed
MaizeGDB (Corn) Zm00025a017191 , Zm00025a007542
Brachypodium -
Barley HORVU4Hr1G002570.1 , HORVU4Hr1G002570.2
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G018300 expressed protein -
2 Sobic.002G386200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@EF hand family protein, putative, expressed -
3 Sobic.002G199500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CaM - probable calciumbinding protein CML45(PubMedID : 31721651)@EF hand family protein, putative, expressed K02183: calmodulin
4 Sobic.004G169900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@U-box domain containing protein, expressed -
5 Sobic.001G146500 OsSAUR17 - Auxin-responsive SAUR gene family member, expressed -
6 Sobic.009G067400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.001G381300 WRKY79, expressed -
8 Sobic.010G163150 - -
9 Sobic.009G121600 cytochrome P450 86A2, putative, expressed -
10 Sobic.004G297100 Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor, putative, expressed K09286: EREBP-like factor
11 Sobic.001G059400 acetyltransferase, GNAT family, putative, expressed -
12 Sobic.001G259500 prenylated rab acceptor, putative, expressed -
13 Sobic.001G259500 prenylated rab acceptor, putative, expressed -
14 Sobic.001G259500 prenylated rab acceptor, putative, expressed -
15 Sobic.001G259500 prenylated rab acceptor, putative, expressed -
16 Sobic.001G259500 prenylated rab acceptor, putative, expressed -
17 Sobic.005G041000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
18 Sobic.009G010400 zinc finger, RING-type, putative, expressed -
19 Sobic.002G241250 - -
20 Sobic.005G226100 ZOS11-10 - C2H2 zinc finger protein, expressed -


Gene co-expression network
sample Sobic001G146400 Sobic001G146400 Sobic010G018300 Sobic010G018300 Sobic001G146400--Sobic010G018300 Sobic002G386200 Sobic002G386200 Sobic001G146400--Sobic002G386200 Sobic002G199500 Sobic002G199500 Sobic001G146400--Sobic002G199500 Sobic004G169900 Sobic004G169900 Sobic001G146400--Sobic004G169900 Sobic001G146500 Sobic001G146500 Sobic001G146400--Sobic001G146500 Sobic009G067400 Sobic009G067400 Sobic001G146400--Sobic009G067400 Sobic001G381300 Sobic001G381300 Sobic001G146400--Sobic001G381300 Sobic010G163150 Sobic010G163150 Sobic001G146400--Sobic010G163150 Sobic009G121600 Sobic009G121600 Sobic001G146400--Sobic009G121600 Sobic010G018300--Sobic002G386200 Sobic010G018300--Sobic001G146400 Sobic010G018300--Sobic009G067400 Sobic010G018300--Sobic001G146500 Sobic001G259500 Sobic001G259500 Sobic010G018300--Sobic001G259500 Sobic002G386200--Sobic010G018300 Sobic002G386200--Sobic001G146400 Sobic004G181200 Sobic004G181200 Sobic002G386200--Sobic004G181200 Sobic002G386200--Sobic001G146500 Sobic002G174300 Sobic002G174300 Sobic002G386200--Sobic002G174300 Sobic006G246200 Sobic006G246200 Sobic002G386200--Sobic006G246200 Sobic006G113400 Sobic006G113400 Sobic002G386200--Sobic006G113400 Sobic002G241250 Sobic002G241250 Sobic002G386200--Sobic002G241250 Sobic002G386200--Sobic001G381300 Sobic002G199500--Sobic001G146400 Sobic001G059400 Sobic001G059400 Sobic002G199500--Sobic001G059400 Sobic007G090300 Sobic007G090300 Sobic002G199500--Sobic007G090300 Sobic004G297100 Sobic004G297100 Sobic002G199500--Sobic004G297100 Sobic009G100500 Sobic009G100500 Sobic002G199500--Sobic009G100500 Sobic009G010400 Sobic009G010400 Sobic002G199500--Sobic009G010400 Sobic001G064900 Sobic001G064900 Sobic002G199500--Sobic001G064900 Sobic006G259000 Sobic006G259000 Sobic002G199500--Sobic006G259000 Sobic010G102000 Sobic010G102000 Sobic002G199500--Sobic010G102000 Sobic004G169900--Sobic001G146400 Sobic004G169900--Sobic009G010400 Sobic004G169900--Sobic010G018300 Sobic004G169900--Sobic002G386200 Sobic004G006500 Sobic004G006500 Sobic004G169900--Sobic004G006500 Sobic004G169900--Sobic010G102000 Sobic005G165900 Sobic005G165900 Sobic004G169900--Sobic005G165900 Sobic006G257700 Sobic006G257700 Sobic004G169900--Sobic006G257700 Sobic004G169900--Sobic001G064900 Sobic001G146500--Sobic001G259500 Sobic001G146500--Sobic010G018300 Sobic001G146500--Sobic002G241250 Sobic004G052500 Sobic004G052500 Sobic001G146500--Sobic004G052500 Sobic001G146500--Sobic001G146400 Sobic009G067400--Sobic010G018300 Sobic009G216050 Sobic009G216050 Sobic009G067400--Sobic009G216050 Sobic009G067400--Sobic001G381300 Sobic009G067400--Sobic001G146400 Sobic004G209500 Sobic004G209500 Sobic009G067400--Sobic004G209500 Sobic009G067400--Sobic009G121600 Sobic005G226100 Sobic005G226100 Sobic009G067400--Sobic005G226100 Sobic005G041000 Sobic005G041000 Sobic009G067400--Sobic005G041000 Sobic002G407200 Sobic002G407200 Sobic009G067400--Sobic002G407200 Sobic001G381300--Sobic005G226100 Sobic005G193600 Sobic005G193600 Sobic001G381300--Sobic005G193600 Sobic008G181801 Sobic008G181801 Sobic001G381300--Sobic008G181801 Sobic001G381300--Sobic006G246200 Sobic001G381300--Sobic001G146500 Sobic009G241500 Sobic009G241500 Sobic001G381300--Sobic009G241500 Sobic001G381300--Sobic009G121600 Sobic003G037100 Sobic003G037100 Sobic001G381300--Sobic003G037100 Sobic006G229500 Sobic006G229500 Sobic001G381300--Sobic006G229500 Sobic010G163150--Sobic001G146400 Sobic010G163150--Sobic002G386200 Sobic010G163150--Sobic010G018300 Sobic010G163150--Sobic009G067400 Sobic004G297600 Sobic004G297600 Sobic010G163150--Sobic004G297600 Sobic009G214300 Sobic009G214300 Sobic010G163150--Sobic009G214300 Sobic010G210600 Sobic010G210600 Sobic010G163150--Sobic010G210600 Sobic004G181300 Sobic004G181300 Sobic010G163150--Sobic004G181300 Sobic003G258700 Sobic003G258700 Sobic010G163150--Sobic003G258700 Sobic009G121600--Sobic005G226100 Sobic009G121600--Sobic006G246200 Sobic009G121600--Sobic003G037100 Sobic009G121600--Sobic001G381300 Sobic001G362001 Sobic001G362001 Sobic009G121600--Sobic001G362001 Sobic009G121600--Sobic010G018300 Sobic005G082700 Sobic005G082700 Sobic009G121600--Sobic005G082700 Sobic009G121600--Sobic009G241500 Sobic009G121600--Sobic009G216050
Octagon: transcription factors


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