Gene annotation
| Transcriptome id | Sobic.001G146500.1 |
|---|---|
| Synonym | |
| Functional annotation | OsSAUR17 - Auxin-responsive SAUR gene family member, expressed |
| UniProt | A0A1B6QJ03 |
| Pfam | PF02519 |
| Panther DB | PTHR31374 PTHR31374:SF50 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | GO:0009733; response to auxin |
Orthologs (automatic annotation)
| TAIR | AT1G56150 : SAUR-like auxin-responsive protein family |
|---|---|
| RAP-DB (Rice) | LOC_Os03g45860.1 : OsSAUR17 - Auxin-responsive SAUR gene family member, expressed |
| MaizeGDB (Corn) | Zm00025a017191 , Zm00025a007542 |
| Brachypodium | - |
| Barley | HORVU4Hr1G002550.1 , HORVU4Hr1G002570.1 , HORVU4Hr1G002570.2 |
| Wheat | - |
| Populus | - |
JBrowse
| Sobic.001G146500 |
Expression pattern by RNA-Seq analysis
 |
Find similar expressed genes
 |
| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G259500 | prenylated rab acceptor, putative, expressed | - |
| 2 | Sobic.001G259500 | prenylated rab acceptor, putative, expressed | - |
| 3 | Sobic.001G259500 | prenylated rab acceptor, putative, expressed | - |
| 4 | Sobic.001G259500 | prenylated rab acceptor, putative, expressed | - |
| 5 | Sobic.001G259500 | prenylated rab acceptor, putative, expressed | - |
| 6 | Sobic.010G018300 | expressed protein | - |
| 7 | Sobic.002G241250 | - | - |
| 8 | Sobic.004G052500 | - | - |
| 9 | Sobic.001G146400 | "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsSAUR16 - Auxin-responsive SAUR gene family member, expressed | - |
| 10 | Sobic.002G386200 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@EF hand family protein, putative, expressed | - |
| 11 | Sobic.001G381300 | WRKY79, expressed | - |
| 12 | Sobic.008G183300 | thaumatin, putative, expressed | - |
| 13 | Sobic.006G246200 | protein kinase, putative, expressed | - |
| 14 | Sobic.004G181200 | RING-H2 finger protein ATL3F, putative, expressed | - |
| 15 | Sobic.006G113900 | heavy metal associated domain containing protein, expressed | - |
| 16 | Sobic.005G041000 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@no apical meristem protein, putative, expressed | - |
| 17 | Sobic.001G136300 | nodulin family protein, putative, expressed | - |
| 18 | Sobic.003G037100 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein | - |
| 19 | Sobic.002G269032 | - | - |
| 20 | Sobic.005G226100 | ZOS11-10 - C2H2 zinc finger protein, expressed | - |
Gene co-expression network
Octagon: transcription factors
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