Gene annotation
Transcriptome id Sobic.002G386200.1
Synonym Sb02g040240
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
EF hand family protein, putative, expressed
UniProt C5X375
Pfam PF13405
Panther DB PTHR10891 PTHR10891:SF574
NCBI CDD KOG0027; Calmodulin and related proteins (EF-Hand superfamily)
KEGG Orthology -
Gene Ontology GO:0005509; calcium ion binding


Orthologs (automatic annotation)
TAIR AT5G39670 : Calcium-binding EF-hand family protein
RAP-DB (Rice) LOC_Os07g43800.1 : EF hand family protein, putative, expressed
MaizeGDB (Corn) Zm00025a048861 , Zm00025a015296
Brachypodium -
Barley HORVU2Hr1G028310.1 , HORVU2Hr1G028330.2
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.002G386200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G018300 expressed protein -
2 Sobic.001G146400 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsSAUR16 - Auxin-responsive SAUR gene family member, expressed -
3 Sobic.004G181200 RING-H2 finger protein ATL3F, putative, expressed -
4 Sobic.001G146500 OsSAUR17 - Auxin-responsive SAUR gene family member, expressed -
5 Sobic.002G174300 senescence-related tran- scription factor gene(PubMedID : 26317421)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@WRKY74, expressed -
6 Sobic.006G246200 protein kinase, putative, expressed -
7 Sobic.006G113400 heavy metal associated domain containing protein, expressed -
8 Sobic.002G241250 - -
9 Sobic.001G381300 WRKY79, expressed -
10 Sobic.001G259500 prenylated rab acceptor, putative, expressed -
11 Sobic.001G259500 prenylated rab acceptor, putative, expressed -
12 Sobic.001G259500 prenylated rab acceptor, putative, expressed -
13 Sobic.001G259500 prenylated rab acceptor, putative, expressed -
14 Sobic.001G259500 prenylated rab acceptor, putative, expressed -
15 Sobic.005G041000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
16 Sobic.004G160300 expressed protein -
17 Sobic.003G258700 expressed protein -
18 Sobic.009G121600 cytochrome P450 86A2, putative, expressed -
19 Sobic.010G163150 - -
20 Sobic.004G169900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@U-box domain containing protein, expressed -


Gene co-expression network
sample Sobic002G386200 Sobic002G386200 Sobic010G018300 Sobic010G018300 Sobic002G386200--Sobic010G018300 Sobic001G146400 Sobic001G146400 Sobic002G386200--Sobic001G146400 Sobic004G181200 Sobic004G181200 Sobic002G386200--Sobic004G181200 Sobic001G146500 Sobic001G146500 Sobic002G386200--Sobic001G146500 Sobic002G174300 Sobic002G174300 Sobic002G386200--Sobic002G174300 Sobic006G246200 Sobic006G246200 Sobic002G386200--Sobic006G246200 Sobic006G113400 Sobic006G113400 Sobic002G386200--Sobic006G113400 Sobic002G241250 Sobic002G241250 Sobic002G386200--Sobic002G241250 Sobic001G381300 Sobic001G381300 Sobic002G386200--Sobic001G381300 Sobic010G018300--Sobic002G386200 Sobic010G018300--Sobic001G146400 Sobic009G067400 Sobic009G067400 Sobic010G018300--Sobic009G067400 Sobic010G018300--Sobic001G146500 Sobic001G259500 Sobic001G259500 Sobic010G018300--Sobic001G259500 Sobic001G146400--Sobic010G018300 Sobic001G146400--Sobic002G386200 Sobic002G199500 Sobic002G199500 Sobic001G146400--Sobic002G199500 Sobic004G169900 Sobic004G169900 Sobic001G146400--Sobic004G169900 Sobic001G146400--Sobic001G146500 Sobic001G146400--Sobic009G067400 Sobic001G146400--Sobic001G381300 Sobic010G163150 Sobic010G163150 Sobic001G146400--Sobic010G163150 Sobic009G121600 Sobic009G121600 Sobic001G146400--Sobic009G121600 Sobic004G181200--Sobic006G113400 Sobic001G363200 Sobic001G363200 Sobic004G181200--Sobic001G363200 Sobic004G160300 Sobic004G160300 Sobic004G181200--Sobic004G160300 Sobic004G181200--Sobic001G259500 Sobic004G181200--Sobic006G246200 Sobic001G146500--Sobic001G259500 Sobic001G146500--Sobic010G018300 Sobic001G146500--Sobic002G241250 Sobic004G052500 Sobic004G052500 Sobic001G146500--Sobic004G052500 Sobic001G146500--Sobic001G146400 Sobic001G450500 Sobic001G450500 Sobic002G174300--Sobic001G450500 Sobic005G165900 Sobic005G165900 Sobic002G174300--Sobic005G165900 Sobic002G174300--Sobic002G386200 Sobic005G041000 Sobic005G041000 Sobic002G174300--Sobic005G041000 Sobic002G174300--Sobic004G181200 Sobic002G174300--Sobic004G160300 Sobic009G010400 Sobic009G010400 Sobic002G174300--Sobic009G010400 Sobic009G214300 Sobic009G214300 Sobic002G174300--Sobic009G214300 Sobic003G258700 Sobic003G258700 Sobic002G174300--Sobic003G258700 Sobic009G241500 Sobic009G241500 Sobic006G246200--Sobic009G241500 Sobic001G136300 Sobic001G136300 Sobic006G246200--Sobic001G136300 Sobic005G082700 Sobic005G082700 Sobic006G246200--Sobic005G082700 Sobic001G362001 Sobic001G362001 Sobic006G246200--Sobic001G362001 Sobic006G168000 Sobic006G168000 Sobic006G246200--Sobic006G168000 Sobic006G246200--Sobic004G181200 Sobic006G246200--Sobic009G121600 Sobic005G226100 Sobic005G226100 Sobic006G246200--Sobic005G226100 Sobic006G246200--Sobic002G241250 Sobic006G113400--Sobic004G181200 Sobic006G113400--Sobic001G259500 Sobic008G183300 Sobic008G183300 Sobic006G113400--Sobic008G183300 Sobic006G113400--Sobic006G246200 Sobic002G169200 Sobic002G169200 Sobic006G113400--Sobic002G169200 Sobic002G241250--Sobic001G146500 Sobic002G241250--Sobic005G041000 Sobic002G241250--Sobic004G181200 Sobic002G241250--Sobic006G246200 Sobic002G241250--Sobic001G259500 Sobic001G381300--Sobic005G226100 Sobic005G193600 Sobic005G193600 Sobic001G381300--Sobic005G193600 Sobic008G181801 Sobic008G181801 Sobic001G381300--Sobic008G181801 Sobic001G381300--Sobic006G246200 Sobic001G381300--Sobic001G146500 Sobic001G381300--Sobic009G241500 Sobic001G381300--Sobic009G121600 Sobic003G037100 Sobic003G037100 Sobic001G381300--Sobic003G037100 Sobic006G229500 Sobic006G229500 Sobic001G381300--Sobic006G229500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.