Gene annotation
Transcriptome id Sobic.006G113400.1
Synonym Sb06g019500
Functional annotation heavy metal associated domain containing protein, expressed
UniProt C5YA97
Pfam -
Panther DB PTHR22814 PTHR22814:SF158
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G05030 : Copper transport protein family
RAP-DB (Rice) LOC_Os04g39010.1 : heavy metal associated domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley HORVU2Hr1G081600.3 , HORVU2Hr1G081600.2 , HORVU2Hr1G081600.5 , HORVU2Hr1G081600.4 , HORVU2Hr1G081640.1 , HORVU2Hr1G081640.2
Wheat TraesCS2B02G350100 , TraesCS2B02G349700 , TraesCS2A02G332300 , TraesCS2A02G332200 , TraesCS2D02G330500 , TraesCS2B02G350000 , TraesCS2B02G349400 , TraesCS2B02G349600 , TraesCS2A02G332100 , TraesCS2B02G349300 , TraesCS2A02G332400 , TraesCS2D02G330400 , TraesCS2B02G349800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G181200 RING-H2 finger protein ATL3F, putative, expressed -
2 Sobic.001G259500 prenylated rab acceptor, putative, expressed -
3 Sobic.001G259500 prenylated rab acceptor, putative, expressed -
4 Sobic.001G259500 prenylated rab acceptor, putative, expressed -
5 Sobic.001G259500 prenylated rab acceptor, putative, expressed -
6 Sobic.001G259500 prenylated rab acceptor, putative, expressed -
7 Sobic.008G183300 thaumatin, putative, expressed -
8 Sobic.006G246200 protein kinase, putative, expressed -
9 Sobic.002G169200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsWAK51 - OsWAK receptor-like protein kinase, expressed -
10 Sobic.010G018300 expressed protein -
11 Sobic.004G052500 - -
12 Sobic.002G386200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@EF hand family protein, putative, expressed -
13 Sobic.002G241250 - -
14 Sobic.005G041000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
15 Sobic.001G146500 OsSAUR17 - Auxin-responsive SAUR gene family member, expressed -
16 Sobic.009G241500 expressed protein -
17 Sobic.004G160300 expressed protein -
18 Sobic.001G136300 nodulin family protein, putative, expressed -
19 Sobic.002G269032 - -
20 Sobic.005G082700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NADP-dependent oxidoreductase, putative, expressed K07119: PTGR3, prostaglandin reductase 3


Gene co-expression network
sample Sobic006G113400 Sobic006G113400 Sobic004G181200 Sobic004G181200 Sobic006G113400--Sobic004G181200 Sobic001G259500 Sobic001G259500 Sobic006G113400--Sobic001G259500 Sobic008G183300 Sobic008G183300 Sobic006G113400--Sobic008G183300 Sobic006G246200 Sobic006G246200 Sobic006G113400--Sobic006G246200 Sobic002G169200 Sobic002G169200 Sobic006G113400--Sobic002G169200 Sobic004G181200--Sobic006G113400 Sobic001G363200 Sobic001G363200 Sobic004G181200--Sobic001G363200 Sobic004G160300 Sobic004G160300 Sobic004G181200--Sobic004G160300 Sobic004G181200--Sobic001G259500 Sobic004G181200--Sobic006G246200 Sobic001G259500--Sobic001G259500 Sobic009G241500 Sobic009G241500 Sobic001G259500--Sobic009G241500 Sobic002G269032 Sobic002G269032 Sobic001G259500--Sobic002G269032 Sobic004G052500 Sobic004G052500 Sobic001G259500--Sobic004G052500 Sobic001G146500 Sobic001G146500 Sobic001G259500--Sobic001G146500 Sobic003G138100 Sobic003G138100 Sobic001G259500--Sobic003G138100 Sobic008G183300--Sobic004G052500 Sobic008G183300--Sobic001G259500 Sobic005G082700 Sobic005G082700 Sobic008G183300--Sobic005G082700 Sobic008G183300--Sobic006G113400 Sobic008G183300--Sobic006G246200 Sobic006G246200--Sobic009G241500 Sobic001G136300 Sobic001G136300 Sobic006G246200--Sobic001G136300 Sobic006G246200--Sobic005G082700 Sobic001G362001 Sobic001G362001 Sobic006G246200--Sobic001G362001 Sobic006G168000 Sobic006G168000 Sobic006G246200--Sobic006G168000 Sobic006G246200--Sobic004G181200 Sobic009G121600 Sobic009G121600 Sobic006G246200--Sobic009G121600 Sobic005G226100 Sobic005G226100 Sobic006G246200--Sobic005G226100 Sobic002G241250 Sobic002G241250 Sobic006G246200--Sobic002G241250 Sobic006G003700 Sobic006G003700 Sobic002G169200--Sobic006G003700 Sobic002G169200--Sobic006G113400 Sobic002G169200--Sobic001G136300 Sobic002G169200--Sobic004G181200 Sobic002G169200--Sobic004G160300 Sobic004G158050 Sobic004G158050 Sobic002G169200--Sobic004G158050 Sobic005G193600 Sobic005G193600 Sobic002G169200--Sobic005G193600 Sobic002G169200--Sobic006G246200 Sobic002G169200--Sobic001G146500
Octagon: transcription factors


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