Gene annotation
Transcriptome id Sobic.004G181200.1
Synonym Sb04g023040
Functional annotation RING-H2 finger protein ATL3F, putative, expressed
UniProt C5XUX7
Pfam PF13639
Panther DB PTHR14155:SF147 PTHR14155
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding GO:0008270zinc ion binding


Orthologs (automatic annotation)
TAIR AT1G53820 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os02g35347.1 : RING-H2 finger protein ATL3F, putative
MaizeGDB (Corn) Zm00025a020694
Brachypodium KQJ82824
Barley HORVU2Hr1G077490.1
Wheat -
Populus -


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cDNA sequences
Sobic.004G181200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G113400 heavy metal associated domain containing protein, expressed -
2 Sobic.001G363200 expressed protein -
3 Sobic.004G160300 expressed protein -
4 Sobic.001G259500 prenylated rab acceptor, putative, expressed -
5 Sobic.001G259500 prenylated rab acceptor, putative, expressed -
6 Sobic.001G259500 prenylated rab acceptor, putative, expressed -
7 Sobic.001G259500 prenylated rab acceptor, putative, expressed -
8 Sobic.001G259500 prenylated rab acceptor, putative, expressed -
9 Sobic.006G246200 protein kinase, putative, expressed -
10 Sobic.002G386200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@EF hand family protein, putative, expressed -
11 Sobic.002G241250 - -
12 Sobic.002G269032 - -
13 Sobic.010G018300 expressed protein -
14 Sobic.001G146500 OsSAUR17 - Auxin-responsive SAUR gene family member, expressed -
15 Sobic.003G037100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
16 Sobic.002G354400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@polyol transporter 5, putative, expressed -
17 Sobic.005G041000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
18 Sobic.003G258700 expressed protein -
19 Sobic.009G241500 expressed protein -
20 Sobic.002G174300 senescence-related tran- scription factor gene(PubMedID : 26317421)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@WRKY74, expressed -


Gene co-expression network
sample Sobic004G181200 Sobic004G181200 Sobic006G113400 Sobic006G113400 Sobic004G181200--Sobic006G113400 Sobic001G363200 Sobic001G363200 Sobic004G181200--Sobic001G363200 Sobic004G160300 Sobic004G160300 Sobic004G181200--Sobic004G160300 Sobic001G259500 Sobic001G259500 Sobic004G181200--Sobic001G259500 Sobic006G246200 Sobic006G246200 Sobic004G181200--Sobic006G246200 Sobic006G113400--Sobic004G181200 Sobic006G113400--Sobic001G259500 Sobic008G183300 Sobic008G183300 Sobic006G113400--Sobic008G183300 Sobic006G113400--Sobic006G246200 Sobic002G169200 Sobic002G169200 Sobic006G113400--Sobic002G169200 Sobic001G363200--Sobic004G160300 Sobic001G363200--Sobic004G181200 Sobic002G354400 Sobic002G354400 Sobic001G363200--Sobic002G354400 Sobic003G258700 Sobic003G258700 Sobic001G363200--Sobic003G258700 Sobic002G202800 Sobic002G202800 Sobic001G363200--Sobic002G202800 Sobic002G173900 Sobic002G173900 Sobic001G363200--Sobic002G173900 Sobic002G064200 Sobic002G064200 Sobic001G363200--Sobic002G064200 Sobic003G037100 Sobic003G037100 Sobic001G363200--Sobic003G037100 Sobic003G256000 Sobic003G256000 Sobic001G363200--Sobic003G256000 Sobic004G160300--Sobic001G363200 Sobic004G160300--Sobic003G258700 Sobic004G160300--Sobic004G181200 Sobic004G160300--Sobic003G037100 Sobic002G174300 Sobic002G174300 Sobic004G160300--Sobic002G174300 Sobic002G241250 Sobic002G241250 Sobic004G160300--Sobic002G241250 Sobic002G386200 Sobic002G386200 Sobic004G160300--Sobic002G386200 Sobic004G160300--Sobic006G113400 Sobic001G146500 Sobic001G146500 Sobic004G160300--Sobic001G146500 Sobic001G259500--Sobic001G259500 Sobic009G241500 Sobic009G241500 Sobic001G259500--Sobic009G241500 Sobic002G269032 Sobic002G269032 Sobic001G259500--Sobic002G269032 Sobic004G052500 Sobic004G052500 Sobic001G259500--Sobic004G052500 Sobic001G259500--Sobic001G146500 Sobic003G138100 Sobic003G138100 Sobic001G259500--Sobic003G138100 Sobic006G246200--Sobic009G241500 Sobic001G136300 Sobic001G136300 Sobic006G246200--Sobic001G136300 Sobic005G082700 Sobic005G082700 Sobic006G246200--Sobic005G082700 Sobic001G362001 Sobic001G362001 Sobic006G246200--Sobic001G362001 Sobic006G168000 Sobic006G168000 Sobic006G246200--Sobic006G168000 Sobic006G246200--Sobic004G181200 Sobic009G121600 Sobic009G121600 Sobic006G246200--Sobic009G121600 Sobic005G226100 Sobic005G226100 Sobic006G246200--Sobic005G226100 Sobic006G246200--Sobic002G241250
Octagon: transcription factors


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