Gene annotation
Transcriptome id Sobic.002G174300.1
Synonym ATWRKY53, WRKY53;WRKY53, WRKY53, Sb02g022290
Functional annotation senescence-related tran- scription factor gene (PubMedID : 26317421)
SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
WRKY74, expressed
UniProt C5XAG0
Pfam PF03106
Panther DB PTHR32096 PTHR32096:SF20
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT4G23810 : WRKY family transcription factor
RAP-DB (Rice) LOC_Os09g16510.1 : WRKY74, expressed
MaizeGDB (Corn) Zm00025a046551 , Zm00025a046550 , Zm00025a013768
Brachypodium -
Barley HORVU5Hr1G034830.5 , HORVU5Hr1G034830.4 , HORVU5Hr1G034830.1 , HORVU5Hr1G034830.3 , HORVU5Hr1G034830.2 , HORVU0Hr1G012740.2 , HORVU0Hr1G012740.3 , HORVU0Hr1G012740.1 , HORVU5Hr1G056130.2 , HORVU5Hr1G056130.1 , HORVU5Hr1G056130.3 , HORVU5Hr1G056130.4 , HORVU5Hr1G056130.5 , HORVU5Hr1G056130.6
Wheat TraesCS5D02G190800 , TraesCS5B02G183800 , TraesCS5A02G185600 , TraesCS5A02G185700 , TraesCS5D02G190700 , TraesCS5B02G183700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G450500 STE_MEK_ste7_MAP2K.6 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
2 Sobic.005G165900 zinc finger, C3HC4 type domain containing protein, expressed -
3 Sobic.002G386200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@EF hand family protein, putative, expressed -
4 Sobic.005G041000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
5 Sobic.004G181200 RING-H2 finger protein ATL3F, putative, expressed -
6 Sobic.004G160300 expressed protein -
7 Sobic.009G010400 zinc finger, RING-type, putative, expressed -
8 Sobic.009G214300 expressed protein -
9 Sobic.003G258700 expressed protein -
10 Sobic.002G241250 - -
11 Sobic.010G018300 expressed protein -
12 Sobic.006G113400 heavy metal associated domain containing protein, expressed -
13 Sobic.006G246200 protein kinase, putative, expressed -
14 Sobic.001G363200 expressed protein -
15 Sobic.002G209100 glutamate receptor, putative, expressed -
16 Sobic.001G146400 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsSAUR16 - Auxin-responsive SAUR gene family member, expressed -
17 Sobic.010G120800 Leucine-rich repeat receptor-like serine/threonine/tyrosine protein kinase(PubMedID : 31721651)@protein kinase domain containing protein, expressed -
18 Sobic.005G085500 - -
19 Sobic.007G139900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.004G195800 heavy metal associated domain containing protein, expressed -


Gene co-expression network
sample Sobic002G174300 Sobic002G174300 Sobic001G450500 Sobic001G450500 Sobic002G174300--Sobic001G450500 Sobic005G165900 Sobic005G165900 Sobic002G174300--Sobic005G165900 Sobic002G386200 Sobic002G386200 Sobic002G174300--Sobic002G386200 Sobic005G041000 Sobic005G041000 Sobic002G174300--Sobic005G041000 Sobic004G181200 Sobic004G181200 Sobic002G174300--Sobic004G181200 Sobic004G160300 Sobic004G160300 Sobic002G174300--Sobic004G160300 Sobic009G010400 Sobic009G010400 Sobic002G174300--Sobic009G010400 Sobic009G214300 Sobic009G214300 Sobic002G174300--Sobic009G214300 Sobic003G258700 Sobic003G258700 Sobic002G174300--Sobic003G258700 Sobic001G450500--Sobic002G174300 Sobic001G288100 Sobic001G288100 Sobic001G450500--Sobic001G288100 Sobic002G257100 Sobic002G257100 Sobic001G450500--Sobic002G257100 Sobic005G217700 Sobic005G217700 Sobic001G450500--Sobic005G217700 Sobic001G450500--Sobic002G386200 Sobic004G114500 Sobic004G114500 Sobic001G450500--Sobic004G114500 Sobic004G258400 Sobic004G258400 Sobic001G450500--Sobic004G258400 Sobic002G195800 Sobic002G195800 Sobic001G450500--Sobic002G195800 Sobic001G450500--Sobic009G010400 Sobic005G165900--Sobic002G174300 Sobic005G165900--Sobic003G258700 Sobic005G165900--Sobic002G386200 Sobic005G165900--Sobic004G160300 Sobic001G071300 Sobic001G071300 Sobic005G165900--Sobic001G071300 Sobic004G169900 Sobic004G169900 Sobic005G165900--Sobic004G169900 Sobic005G165900--Sobic004G181200 Sobic005G165900--Sobic009G214300 Sobic004G220600 Sobic004G220600 Sobic005G165900--Sobic004G220600 Sobic010G018300 Sobic010G018300 Sobic002G386200--Sobic010G018300 Sobic001G146400 Sobic001G146400 Sobic002G386200--Sobic001G146400 Sobic002G386200--Sobic004G181200 Sobic001G146500 Sobic001G146500 Sobic002G386200--Sobic001G146500 Sobic002G386200--Sobic002G174300 Sobic006G246200 Sobic006G246200 Sobic002G386200--Sobic006G246200 Sobic006G113400 Sobic006G113400 Sobic002G386200--Sobic006G113400 Sobic002G241250 Sobic002G241250 Sobic002G386200--Sobic002G241250 Sobic001G381300 Sobic001G381300 Sobic002G386200--Sobic001G381300 Sobic005G041000--Sobic002G241250 Sobic005G041000--Sobic006G246200 Sobic001G259500 Sobic001G259500 Sobic005G041000--Sobic001G259500 Sobic005G041000--Sobic010G018300 Sobic009G241500 Sobic009G241500 Sobic005G041000--Sobic009G241500 Sobic004G181200--Sobic006G113400 Sobic001G363200 Sobic001G363200 Sobic004G181200--Sobic001G363200 Sobic004G181200--Sobic004G160300 Sobic004G181200--Sobic001G259500 Sobic004G181200--Sobic006G246200 Sobic004G160300--Sobic001G363200 Sobic004G160300--Sobic003G258700 Sobic004G160300--Sobic004G181200 Sobic003G037100 Sobic003G037100 Sobic004G160300--Sobic003G037100 Sobic004G160300--Sobic002G174300 Sobic004G160300--Sobic002G241250 Sobic004G160300--Sobic002G386200 Sobic004G160300--Sobic006G113400 Sobic004G160300--Sobic001G146500 Sobic004G086800 Sobic004G086800 Sobic009G010400--Sobic004G086800 Sobic004G065900 Sobic004G065900 Sobic009G010400--Sobic004G065900 Sobic001G064900 Sobic001G064900 Sobic009G010400--Sobic001G064900 Sobic009G100500 Sobic009G100500 Sobic009G010400--Sobic009G100500 Sobic006G257700 Sobic006G257700 Sobic009G010400--Sobic006G257700 Sobic006G259000 Sobic006G259000 Sobic009G010400--Sobic006G259000 Sobic001G095700 Sobic001G095700 Sobic009G010400--Sobic001G095700 Sobic010G102000 Sobic010G102000 Sobic009G010400--Sobic010G102000 Sobic004G006500 Sobic004G006500 Sobic009G010400--Sobic004G006500 Sobic004G195800 Sobic004G195800 Sobic009G214300--Sobic004G195800 Sobic010G120800 Sobic010G120800 Sobic009G214300--Sobic010G120800 Sobic009G214300--Sobic002G174300 Sobic010G214200 Sobic010G214200 Sobic009G214300--Sobic010G214200 Sobic005G085500 Sobic005G085500 Sobic009G214300--Sobic005G085500 Sobic002G202700 Sobic002G202700 Sobic009G214300--Sobic002G202700 Sobic002G209100 Sobic002G209100 Sobic009G214300--Sobic002G209100 Sobic010G163150 Sobic010G163150 Sobic009G214300--Sobic010G163150 Sobic002G216500 Sobic002G216500 Sobic009G214300--Sobic002G216500 Sobic003G258700--Sobic004G160300 Sobic002G202800 Sobic002G202800 Sobic003G258700--Sobic002G202800 Sobic003G258700--Sobic001G363200 Sobic003G258700--Sobic005G165900 Sobic003G258700--Sobic004G181200 Sobic003G291700 Sobic003G291700 Sobic003G258700--Sobic003G291700 Sobic003G242800 Sobic003G242800 Sobic003G258700--Sobic003G242800 Sobic003G258700--Sobic002G386200 Sobic003G258700--Sobic003G037100
Octagon: transcription factors


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