Gene annotation
Transcriptome id Sobic.005G165900.1
Synonym Sb05g022660
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5Y5A1
Pfam PF13639
Panther DB PTHR22763 PTHR22763:SF67
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT5G15820 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os11g37230.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a033900
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.005G165900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G174300 senescence-related tran- scription factor gene(PubMedID : 26317421)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@WRKY74, expressed -
2 Sobic.003G258700 expressed protein -
3 Sobic.002G386200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@EF hand family protein, putative, expressed -
4 Sobic.004G160300 expressed protein -
5 Sobic.001G071300 expressed protein -
6 Sobic.004G169900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@U-box domain containing protein, expressed -
7 Sobic.004G181200 RING-H2 finger protein ATL3F, putative, expressed -
8 Sobic.009G214300 expressed protein -
9 Sobic.004G220600 phenylalanine ammonia-lyase, putative, expressed K10775: phenylalanine ammonia-lyase
10 Sobic.003G242800 down-regulated TF in developmental senescence(PubMedID : 27586543)@WRKY15, expressed -
11 Sobic.001G146400 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsSAUR16 - Auxin-responsive SAUR gene family member, expressed -
12 Sobic.006G257700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@heavy metal transport/detoxification protein, putative, expressed -
13 Sobic.009G010400 zinc finger, RING-type, putative, expressed -
14 Sobic.002G202800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@WRKY62, expressed -
15 Sobic.010G163150 - -
16 Sobic.001G363200 expressed protein -
17 Sobic.004G138400 WRKY51, expressed -
18 Sobic.001G450500 STE_MEK_ste7_MAP2K.6 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
19 Sobic.007G139900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.010G018300 expressed protein -


Gene co-expression network
sample Sobic005G165900 Sobic005G165900 Sobic002G174300 Sobic002G174300 Sobic005G165900--Sobic002G174300 Sobic003G258700 Sobic003G258700 Sobic005G165900--Sobic003G258700 Sobic002G386200 Sobic002G386200 Sobic005G165900--Sobic002G386200 Sobic004G160300 Sobic004G160300 Sobic005G165900--Sobic004G160300 Sobic001G071300 Sobic001G071300 Sobic005G165900--Sobic001G071300 Sobic004G169900 Sobic004G169900 Sobic005G165900--Sobic004G169900 Sobic004G181200 Sobic004G181200 Sobic005G165900--Sobic004G181200 Sobic009G214300 Sobic009G214300 Sobic005G165900--Sobic009G214300 Sobic004G220600 Sobic004G220600 Sobic005G165900--Sobic004G220600 Sobic001G450500 Sobic001G450500 Sobic002G174300--Sobic001G450500 Sobic002G174300--Sobic005G165900 Sobic002G174300--Sobic002G386200 Sobic005G041000 Sobic005G041000 Sobic002G174300--Sobic005G041000 Sobic002G174300--Sobic004G181200 Sobic002G174300--Sobic004G160300 Sobic009G010400 Sobic009G010400 Sobic002G174300--Sobic009G010400 Sobic002G174300--Sobic009G214300 Sobic002G174300--Sobic003G258700 Sobic003G258700--Sobic004G160300 Sobic002G202800 Sobic002G202800 Sobic003G258700--Sobic002G202800 Sobic001G363200 Sobic001G363200 Sobic003G258700--Sobic001G363200 Sobic003G258700--Sobic005G165900 Sobic003G258700--Sobic004G181200 Sobic003G291700 Sobic003G291700 Sobic003G258700--Sobic003G291700 Sobic003G242800 Sobic003G242800 Sobic003G258700--Sobic003G242800 Sobic003G258700--Sobic002G386200 Sobic003G037100 Sobic003G037100 Sobic003G258700--Sobic003G037100 Sobic010G018300 Sobic010G018300 Sobic002G386200--Sobic010G018300 Sobic001G146400 Sobic001G146400 Sobic002G386200--Sobic001G146400 Sobic002G386200--Sobic004G181200 Sobic001G146500 Sobic001G146500 Sobic002G386200--Sobic001G146500 Sobic002G386200--Sobic002G174300 Sobic006G246200 Sobic006G246200 Sobic002G386200--Sobic006G246200 Sobic006G113400 Sobic006G113400 Sobic002G386200--Sobic006G113400 Sobic002G241250 Sobic002G241250 Sobic002G386200--Sobic002G241250 Sobic001G381300 Sobic001G381300 Sobic002G386200--Sobic001G381300 Sobic004G160300--Sobic001G363200 Sobic004G160300--Sobic003G258700 Sobic004G160300--Sobic004G181200 Sobic004G160300--Sobic003G037100 Sobic004G160300--Sobic002G174300 Sobic004G160300--Sobic002G241250 Sobic004G160300--Sobic002G386200 Sobic004G160300--Sobic006G113400 Sobic004G160300--Sobic001G146500 Sobic001G071300--Sobic005G165900 Sobic001G071300--Sobic004G220600 Sobic001G071300--Sobic004G169900 Sobic001G071300--Sobic003G258700 Sobic002G216500 Sobic002G216500 Sobic001G071300--Sobic002G216500 Sobic001G071300--Sobic009G214300 Sobic003G138400 Sobic003G138400 Sobic001G071300--Sobic003G138400 Sobic003G376200 Sobic003G376200 Sobic001G071300--Sobic003G376200 Sobic001G071300--Sobic009G010400 Sobic004G169900--Sobic001G146400 Sobic004G169900--Sobic009G010400 Sobic004G169900--Sobic010G018300 Sobic004G169900--Sobic002G386200 Sobic004G006500 Sobic004G006500 Sobic004G169900--Sobic004G006500 Sobic010G102000 Sobic010G102000 Sobic004G169900--Sobic010G102000 Sobic004G169900--Sobic005G165900 Sobic006G257700 Sobic006G257700 Sobic004G169900--Sobic006G257700 Sobic001G064900 Sobic001G064900 Sobic004G169900--Sobic001G064900 Sobic004G181200--Sobic006G113400 Sobic004G181200--Sobic001G363200 Sobic004G181200--Sobic004G160300 Sobic001G259500 Sobic001G259500 Sobic004G181200--Sobic001G259500 Sobic004G181200--Sobic006G246200 Sobic004G195800 Sobic004G195800 Sobic009G214300--Sobic004G195800 Sobic010G120800 Sobic010G120800 Sobic009G214300--Sobic010G120800 Sobic009G214300--Sobic002G174300 Sobic010G214200 Sobic010G214200 Sobic009G214300--Sobic010G214200 Sobic005G085500 Sobic005G085500 Sobic009G214300--Sobic005G085500 Sobic002G202700 Sobic002G202700 Sobic009G214300--Sobic002G202700 Sobic002G209100 Sobic002G209100 Sobic009G214300--Sobic002G209100 Sobic010G163150 Sobic010G163150 Sobic009G214300--Sobic010G163150 Sobic009G214300--Sobic002G216500 Sobic004G220600--Sobic002G216500 Sobic006G168000 Sobic006G168000 Sobic004G220600--Sobic006G168000 Sobic005G218500 Sobic005G218500 Sobic004G220600--Sobic005G218500 Sobic003G378301 Sobic003G378301 Sobic004G220600--Sobic003G378301 Sobic004G220600--Sobic003G138400 Sobic004G220600--Sobic003G376200 Sobic008G181801 Sobic008G181801 Sobic004G220600--Sobic008G181801 Sobic009G241500 Sobic009G241500 Sobic004G220600--Sobic009G241500 Sobic008G075400 Sobic008G075400 Sobic004G220600--Sobic008G075400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.