Gene annotation
Transcriptome id Sobic.004G220600.2
Synonym ATPAL1, PAL1
Functional annotation phenylalanine ammonia-lyase, putative, expressed
UniProt C5XXU0
Pfam PF00221
Panther DB PTHR10362 PTHR10362:SF16
NCBI CDD -
KEGG Orthology K10775; phenylalanine ammonia-lyase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G37040 : PHE ammonia lyase 1
RAP-DB (Rice) LOC_Os02g41680.1 : phenylalanine ammonia-lyase, putative, expressed
MaizeGDB (Corn) Zm00025a021097 , Zm00025a021100 , Zm00025a021102 , Zm00025a021099 , Zm00025a032035 , Zm00025a032034 , Zm00025a047442 , Zm00025a032030 , Zm00025a007342 , Zm00025a010654 , Zm00025a010653
Brachypodium KQJ83619 , KQK00414 , KQK00065 , KQK00064 , KQK00416 , KQK00417 , KQK00357 , KQK00415
Barley HORVU0Hr1G016330.10 , HORVU6Hr1G058820.1 , HORVU2Hr1G038140.4 , HORVU2Hr1G038140.5 , HORVU2Hr1G038140.2 , HORVU2Hr1G038140.3 , HORVU2Hr1G038140.1 , HORVU2Hr1G089540.1 , HORVU2Hr1G089440.17 , HORVU2Hr1G089440.16 , HORVU2Hr1G089440.15 , HORVU2Hr1G089440.11 , HORVU2Hr1G089440.10 , HORVU2Hr1G089440.9 , HORVU2Hr1G089440.8 , HORVU2Hr1G089440.6 , HORVU2Hr1G089440.5 , HORVU2Hr1G089440.4 , HORVU2Hr1G089440.3 , HORVU2Hr1G089440.2 , HORVU2Hr1G089440.1 , HORVU6Hr1G058840.1 , HORVU1Hr1G022060.1 , HORVU1Hr1G022060.2 , HORVU2Hr1G038120.4 , HORVU2Hr1G038120.5 , HORVU2Hr1G038120.6 , HORVU6Hr1G058820.4 , HORVU6Hr1G058820.3 , HORVU2Hr1G038120.1 , HORVU2Hr1G038120.2 , HORVU2Hr1G038120.3 , HORVU6Hr1G058820.9 , HORVU6Hr1G058820.8 , HORVU6Hr1G058820.7 , HORVU6Hr1G058820.6 , HORVU6Hr1G058820.12 , HORVU6Hr1G058820.5 , HORVU6Hr1G058820.11 , HORVU6Hr1G058820.10 , HORVU0Hr1G016330.3 , HORVU0Hr1G016330.2 , HORVU0Hr1G016330.1 , HORVU6Hr1G058840.2 , HORVU0Hr1G016330.7 , HORVU0Hr1G016330.6 , HORVU0Hr1G016330.5 , HORVU0Hr1G016330.4 , HORVU0Hr1G016330.9 , HORVU0Hr1G016330.8 , HORVU6Hr1G058820.2
Wheat TraesCS1D02G039300 , TraesCS1D02G039400 , TraesCS2D02G377400 , TraesCS2D02G377200 , TraesCS6A02G222900 , TraesCS1B02G048300 , TraesCS2B02G398200 , TraesCS2B02G398000 , TraesCS2B02G398000 , TraesCS1D02G039500 , TraesCS5B02G468300 , TraesCS2D02G377600 , TraesCS4A02G401300 , TraesCS2A02G381000 , TraesCS2A02G381100 , TraesCS2A02G380800 , TraesCS1B02G048400 , TraesCS1B02G048400 , TraesCS1B02G048500 , TraesCS1B02G048500 , TraesCS2B02G398400 , TraesCS2A02G380900 , TraesCS1B02G048200 , TraesCS6D02G212200 , TraesCS6D02G212200 , TraesCS2B02G398100 , TraesCS2B02G398300 , TraesCS2B02G398300 , TraesCS6D02G212400 , TraesCS6D02G212400 , TraesCS6D02G212400 , TraesCS3D02G016300 , TraesCS6B02G258400 , TraesCS6B02G258400 , TraesCS6B02G258400 , TraesCS1B02G048100 , TraesCS1B02G048100 , TraesCS1A02G037800 , TraesCS6A02G222800 , TraesCS6B02G258500 , TraesCS6B02G258500 , TraesCS2D02G377500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G216500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
2 Sobic.006G168000 AP2 domain containing protein, expressed K09286: EREBP-like factor
3 Sobic.005G218500 Jacalin-like lectin domain containing protein, putative, expressed -
4 Sobic.003G378301 - K17362: acyl-coenzyme A thioesterase 13
5 Sobic.003G138400 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@WRKY9, expressed -
6 Sobic.003G376200 expressed protein -
7 Sobic.008G181801 - -
8 Sobic.009G241500 expressed protein -
9 Sobic.008G075400 - -
10 Sobic.008G085350 - -
11 Sobic.K044407 - -
12 Sobic.006G045000 drought-induced protein 1, putative, expressed -
13 Sobic.010G214200 OsFBK17 - F-box domain and kelch repeat containing protein, expressed -
14 Sobic.005G049475 - -
15 Sobic.010G273700 no apical meristem protein, putative, expressed -
16 Sobic.003G248901 - -
17 Sobic.005G226100 ZOS11-10 - C2H2 zinc finger protein, expressed -
18 Sobic.001G012000 cytochrome P450 71E1, putative, expressed K13029: 4-hydroxyphenylacetaldehyde oxime monooxygenase
19 Sobic.001G381300 WRKY79, expressed -
20 Sobic.003G258700 expressed protein -


Gene co-expression network
sample Sobic004G220600 Sobic004G220600 Sobic002G216500 Sobic002G216500 Sobic004G220600--Sobic002G216500 Sobic006G168000 Sobic006G168000 Sobic004G220600--Sobic006G168000 Sobic005G218500 Sobic005G218500 Sobic004G220600--Sobic005G218500 Sobic003G378301 Sobic003G378301 Sobic004G220600--Sobic003G378301 Sobic003G138400 Sobic003G138400 Sobic004G220600--Sobic003G138400 Sobic003G376200 Sobic003G376200 Sobic004G220600--Sobic003G376200 Sobic008G181801 Sobic008G181801 Sobic004G220600--Sobic008G181801 Sobic009G241500 Sobic009G241500 Sobic004G220600--Sobic009G241500 Sobic008G075400 Sobic008G075400 Sobic004G220600--Sobic008G075400 Sobic002G216500--Sobic004G220600 Sobic006G045000 Sobic006G045000 Sobic002G216500--Sobic006G045000 Sobic002G216500--Sobic005G218500 Sobic010G214200 Sobic010G214200 Sobic002G216500--Sobic010G214200 Sobic004G209500 Sobic004G209500 Sobic002G216500--Sobic004G209500 Sobic006G014700 Sobic006G014700 Sobic002G216500--Sobic006G014700 Sobic002G216500--Sobic003G378301 Sobic003G310500 Sobic003G310500 Sobic002G216500--Sobic003G310500 Sobic004G217700 Sobic004G217700 Sobic002G216500--Sobic004G217700 Sobic006G246200 Sobic006G246200 Sobic006G168000--Sobic006G246200 Sobic006G168000--Sobic009G241500 Sobic005G082700 Sobic005G082700 Sobic006G168000--Sobic005G082700 Sobic006G168000--Sobic004G220600 Sobic005G133166 Sobic005G133166 Sobic006G168000--Sobic005G133166 Sobic006G168000--Sobic008G181801 Sobic010G210700 Sobic010G210700 Sobic006G168000--Sobic010G210700 Sobic001G136300 Sobic001G136300 Sobic006G168000--Sobic001G136300 Sobic009G241400 Sobic009G241400 Sobic006G168000--Sobic009G241400 Sobic005G218500--Sobic003G378301 Sobic005G218500--Sobic002G216500 Sobic001G056400 Sobic001G056400 Sobic005G218500--Sobic001G056400 Sobic005G218500--Sobic008G075400 Sobic002G160600 Sobic002G160600 Sobic005G218500--Sobic002G160600 Sobic005G218500--Sobic004G220600 Sobic007G076000 Sobic007G076000 Sobic005G218500--Sobic007G076000 Sobic005G182701 Sobic005G182701 Sobic005G218500--Sobic005G182701 Sobic007G055600 Sobic007G055600 Sobic005G218500--Sobic007G055600 Sobic003G378301--Sobic001G056400 SobicK044407 SobicK044407 Sobic003G378301--SobicK044407 Sobic001G012000 Sobic001G012000 Sobic003G378301--Sobic001G012000 Sobic002G423600 Sobic002G423600 Sobic003G378301--Sobic002G423600 Sobic003G378301--Sobic004G217700 Sobic003G378301--Sobic005G182701 Sobic003G310200 Sobic003G310200 Sobic003G378301--Sobic003G310200 Sobic003G378301--Sobic006G045000 Sobic003G378301--Sobic007G055600 Sobic010G273700 Sobic010G273700 Sobic003G138400--Sobic010G273700 Sobic003G138400--Sobic004G220600 Sobic004G006500 Sobic004G006500 Sobic003G138400--Sobic004G006500 Sobic001G339600 Sobic001G339600 Sobic003G138400--Sobic001G339600 Sobic009G227800 Sobic009G227800 Sobic003G138400--Sobic009G227800 Sobic004G169900 Sobic004G169900 Sobic003G138400--Sobic004G169900 Sobic004G092000 Sobic004G092000 Sobic003G138400--Sobic004G092000 Sobic003G138400--Sobic002G216500 Sobic009G010400 Sobic009G010400 Sobic003G138400--Sobic009G010400 Sobic003G376200--Sobic004G220600 Sobic003G376200--Sobic002G216500 Sobic003G376200--Sobic004G092000 Sobic003G291700 Sobic003G291700 Sobic003G376200--Sobic003G291700 Sobic003G376200--Sobic005G218500 Sobic002G209100 Sobic002G209100 Sobic003G376200--Sobic002G209100 Sobic003G376200--Sobic010G273700 Sobic008G060300 Sobic008G060300 Sobic003G376200--Sobic008G060300 Sobic002G195800 Sobic002G195800 Sobic003G376200--Sobic002G195800 Sobic008G181801--SobicK044407 Sobic008G181801--Sobic009G241500 Sobic008G181801--Sobic001G012000 Sobic008G181801--Sobic006G045000 Sobic005G226100 Sobic005G226100 Sobic008G181801--Sobic005G226100 Sobic005G085500 Sobic005G085500 Sobic008G181801--Sobic005G085500 Sobic008G181801--Sobic003G310200 Sobic008G181801--Sobic005G082700 Sobic003G037100 Sobic003G037100 Sobic008G181801--Sobic003G037100 Sobic009G241500--Sobic008G181801 Sobic009G241500--Sobic005G082700 Sobic009G241500--Sobic005G226100 Sobic009G241500--Sobic006G246200 Sobic001G259500 Sobic001G259500 Sobic009G241500--Sobic001G259500 Sobic008G075400--Sobic005G218500 Sobic008G075400--Sobic004G220600 Sobic008G075400--Sobic002G216500 Sobic008G075400--Sobic002G160600 Sobic008G075400--Sobic003G376200 Sobic008G075400--Sobic003G378301 Sobic001G320700 Sobic001G320700 Sobic008G075400--Sobic001G320700 Sobic003G248901 Sobic003G248901 Sobic008G075400--Sobic003G248901 Sobic004G140000 Sobic004G140000 Sobic008G075400--Sobic004G140000
Octagon: transcription factors


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