Gene annotation
| Transcriptome id | Sobic.K044407.3,Sobic.K044407.2,Sobic.K044407.1 |
|---|---|
| Synonym | - |
| Functional annotation | - |
| UniProt | C6JSR5 , A0A1W0VQP8 |
| Pfam | PF00566 |
| Panther DB | PTHR22957 PTHR22957:SF277 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT5G41940 : Ypt/Rab-GAP domain of gyp1p superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os08g43380.1 : TBC domain containing protein, expressed |
| MaizeGDB (Corn) | Zm00025a034198 , Zm00025a005711 , Zm00025a014410 |
| Brachypodium | KQJ91147 , KQJ91146 |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G012000 | cytochrome P450 71E1, putative, expressed | K13029: 4-hydroxyphenylacetaldehyde oxime monooxygenase |
| 2 | Sobic.001G056400 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed | K13222: BX1, indole-3-glycerol-phosphate lyase |
| 3 | Sobic.008G181801 | - | - |
| 4 | Sobic.006G045000 | drought-induced protein 1, putative, expressed | - |
| 5 | Sobic.003G378301 | - | K17362: acyl-coenzyme A thioesterase 13 |
| 6 | Sobic.003G310200 | ctr copper transporter family protein, putative, expressed | K14686: SLC31A1, solute carrier family 31 (copper transporter), member 1 |
| 7 | Sobic.005G182701 | - | - |
| 8 | Sobic.002G423600 | "Expressed in drought, cold and heat"(PubMedID : 29862293)@similar to WSI76 protein induced by water stress(PubMedID : 29862293)@glycosyl transferase 8 domain containing protein, putative, expressed | K18819: inositol 3-alpha-galactosyltransferase |
| 9 | Sobic.007G055600 | "Production of (E)-alpha-berg-amotene, sesquisabinene A, (E)-beta-farnesene, zingiberene, beta-bisabolene and beta-sesquiphellandrene, cytoplasm"(PubMedID : 21880075)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@terpene synthase, putative, expressed | K14174: beta-farnesene/exo-alpha-bergamotene synthase |
| 10 | Sobic.009G115300 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein | - |
| 11 | Sobic.001G410450 | - | - |
| 12 | Sobic.005G085500 | - | - |
| 13 | Sobic.004G217700 | enzyme of the cupin superfamily protein, putative, expressed | K06995: uncharacterized protein |
| 14 | Sobic.001G056500 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed | K13222: BX1, indole-3-glycerol-phosphate lyase |
| 15 | Sobic.001G201800 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed | - |
| 16 | Sobic.007G076000 | Cinnamyl alcohol dehydrogenase(PubMedID : 28606901)@Cinnamyl alcohol dehydrogenase(PubMedID : 19087955)@Cinnamyl alcohol dehydrogenase 9 CAD9 (At)(PubMedID : 27208977)@dehydrogenase, putative, expressed | K00083: cinnamyl-alcohol dehydrogenase |
| 17 | Sobic.009G115400 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein | - |
| 18 | Sobic.005G193600 | 3 Ketoacyl CoA synthetase 2 KCS2 (fatty acid elongase) (At)(PubMedID : 27208977)@3-ketoacyl-CoA synthase, putative, expressed | K15397: 3-ketoacyl-CoA synthase |
| 19 | Sobic.002G041800 | gibberellin receptor GID1L2, putative, expressed | - |
| 20 | Sobic.004G078600 | lipoxygenase, putative, expressed | K00454: lipoxygenase |
Gene co-expression network
Octagon: transcription factors
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