Gene annotation
Transcriptome id Sobic.001G056500.1
Synonym Sb01g005150
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed
UniProt C5WX67
Pfam PF00290
Panther DB PTHR10314 PTHR10314:SF112
NCBI CDD KOG4175; Tryptophan synthase alpha chain
KEGG Orthology K13222; BX1, indole-3-glycerol-phosphate lyase
Gene Ontology GO:0006568; tryptophan metabolic process GO:0004834tryptophan synthase activity


Orthologs (automatic annotation)
TAIR AT4G02610 : Aldolase-type TIM barrel family protein
RAP-DB (Rice) LOC_Os03g58300.1 : indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a008571 , Zm00025a029200 , Zm00025a008576
Brachypodium KQK12701 , KQK12700 , KQJ95387 , KQJ95386 , KQJ95385
Barley HORVU5Hr1G106190.4 , HORVU5Hr1G106190.5 , HORVU5Hr1G106190.6 , HORVU5Hr1G106190.1 , HORVU5Hr1G106190.2 , HORVU5Hr1G106190.3 , HORVU3Hr1G003410.7 , HORVU3Hr1G003410.6 , HORVU3Hr1G003410.5 , HORVU3Hr1G003410.4 , HORVU3Hr1G003410.3 , HORVU3Hr1G003410.2 , HORVU3Hr1G003410.1 , HORVU3Hr1G003410.9 , HORVU3Hr1G003410.8 , HORVU3Hr1G003410.11 , HORVU3Hr1G003410.10 , HORVU5Hr1G106090.1 , HORVU5Hr1G106090.3 , HORVU5Hr1G106090.2
Wheat TraesCS3D02G038500 , TraesCS5D02G448500 , TraesCS4D02G207900 , TraesCS3B02G041900 , TraesCS5B02G444600 , TraesCS5D02G448400 , TraesCS5A02G440900 , TraesCS5D02G448200 , TraesCS5D02G447800 , TraesCS5D02G447800 , TraesCS4B02G207100 , TraesCS4B02G207100 , TraesCS4B02G207100 , TraesCS5A02G441100 , TraesCS5A02G441100 , TraesCS5B02G445200 , TraesCS5B02G445200 , TraesCS3A02G041800 , TraesCS3A02G041800 , TraesCS5B02G445100 , TraesCS4A02G097400 , TraesCS5D02G447900 , TraesCS5A02G441300 , TraesCS5A02G440800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G014600 Lipase class 3 family protein (At)(PubMedID : 27208977)@phospholipase, putative, expressed -
2 Sobic.005G182701 - -
3 Sobic.007G055600 "Production of (E)-alpha-berg-amotene, sesquisabinene A, (E)-beta-farnesene, zingiberene, beta-bisabolene and beta-sesquiphellandrene, cytoplasm"(PubMedID : 21880075)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@terpene synthase, putative, expressed K14174: beta-farnesene/exo-alpha-bergamotene synthase
4 Sobic.001G056400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed K13222: BX1, indole-3-glycerol-phosphate lyase
5 Sobic.004G217700 enzyme of the cupin superfamily protein, putative, expressed K06995: uncharacterized protein
6 Sobic.007G076000 Cinnamyl alcohol dehydrogenase(PubMedID : 28606901)@Cinnamyl alcohol dehydrogenase(PubMedID : 19087955)@Cinnamyl alcohol dehydrogenase 9 CAD9 (At)(PubMedID : 27208977)@dehydrogenase, putative, expressed K00083: cinnamyl-alcohol dehydrogenase
7 Sobic.002G423600 "Expressed in drought, cold and heat"(PubMedID : 29862293)@similar to WSI76 protein induced by water stress(PubMedID : 29862293)@glycosyl transferase 8 domain containing protein, putative, expressed K18819: inositol 3-alpha-galactosyltransferase
8 Sobic.006G005500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@von Willebrand factor type A domain containing protein, putative, expressed -
9 Sobic.001G125700 lipoxygenase, putative, expressed K15718: linoleate 9S-lipoxygenase
10 Sobic.001G012000 cytochrome P450 71E1, putative, expressed K13029: 4-hydroxyphenylacetaldehyde oxime monooxygenase
11 Sobic.009G115400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
12 Sobic.009G115300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.003G378301 - K17362: acyl-coenzyme A thioesterase 13
14 Sobic.K044407 - -
15 Sobic.006G007650 - -
16 Sobic.001G432500 expressed protein -
17 Sobic.002G040400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
18 Sobic.006G045000 drought-induced protein 1, putative, expressed -
19 Sobic.008G028600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@WRKY112, expressed -
20 Sobic.003G388400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -


Gene co-expression network
sample Sobic001G056500 Sobic001G056500 Sobic009G014600 Sobic009G014600 Sobic001G056500--Sobic009G014600 Sobic005G182701 Sobic005G182701 Sobic001G056500--Sobic005G182701 Sobic007G055600 Sobic007G055600 Sobic001G056500--Sobic007G055600 Sobic001G056400 Sobic001G056400 Sobic001G056500--Sobic001G056400 Sobic004G217700 Sobic004G217700 Sobic001G056500--Sobic004G217700 Sobic007G076000 Sobic007G076000 Sobic001G056500--Sobic007G076000 Sobic002G423600 Sobic002G423600 Sobic001G056500--Sobic002G423600 Sobic006G005500 Sobic006G005500 Sobic001G056500--Sobic006G005500 Sobic001G125700 Sobic001G125700 Sobic001G056500--Sobic001G125700 Sobic009G014600--Sobic007G076000 Sobic009G014600--Sobic007G055600 Sobic002G040400 Sobic002G040400 Sobic009G014600--Sobic002G040400 Sobic009G014600--Sobic006G005500 Sobic008G028600 Sobic008G028600 Sobic009G014600--Sobic008G028600 Sobic009G014600--Sobic001G125700 Sobic002G087500 Sobic002G087500 Sobic009G014600--Sobic002G087500 Sobic009G014600--Sobic005G182701 Sobic005G219000 Sobic005G219000 Sobic009G014600--Sobic005G219000 Sobic005G182701--Sobic007G055600 Sobic005G182701--Sobic007G076000 Sobic005G182701--Sobic001G056400 Sobic005G182701--Sobic006G005500 Sobic005G182701--Sobic001G125700 Sobic005G182701--Sobic009G014600 Sobic009G115400 Sobic009G115400 Sobic005G182701--Sobic009G115400 Sobic009G115300 Sobic009G115300 Sobic005G182701--Sobic009G115300 Sobic001G012000 Sobic001G012000 Sobic005G182701--Sobic001G012000 Sobic007G055600--Sobic005G182701 Sobic007G055600--Sobic007G076000 Sobic007G055600--Sobic006G005500 Sobic007G055600--Sobic001G125700 Sobic007G055600--Sobic009G014600 Sobic007G055600--Sobic001G056400 Sobic007G055600--Sobic002G040400 Sobic007G055600--Sobic008G028600 Sobic007G055600--Sobic009G115400 Sobic001G056400--Sobic005G182701 Sobic001G056400--Sobic001G012000 Sobic001G056400--Sobic007G055600 SobicK044407 SobicK044407 Sobic001G056400--SobicK044407 Sobic003G378301 Sobic003G378301 Sobic001G056400--Sobic003G378301 Sobic001G056400--Sobic007G076000 Sobic001G056400--Sobic002G423600 Sobic001G056400--Sobic001G056500 Sobic006G045000 Sobic006G045000 Sobic001G056400--Sobic006G045000 Sobic004G217700--Sobic002G423600 Sobic004G217700--Sobic001G056500 Sobic004G217700--Sobic001G056400 Sobic004G217700--Sobic003G378301 Sobic004G217700--Sobic005G182701 Sobic004G217700--SobicK044407 Sobic004G217700--Sobic006G045000 Sobic001G410450 Sobic001G410450 Sobic004G217700--Sobic001G410450 Sobic002G041800 Sobic002G041800 Sobic004G217700--Sobic002G041800 Sobic007G076000--Sobic007G055600 Sobic007G076000--Sobic005G182701 Sobic007G076000--Sobic006G005500 Sobic007G076000--Sobic001G125700 Sobic007G076000--Sobic002G040400 Sobic007G076000--Sobic008G028600 Sobic007G076000--Sobic009G014600 Sobic007G076000--Sobic005G219000 Sobic006G007650 Sobic006G007650 Sobic007G076000--Sobic006G007650 Sobic002G423600--Sobic001G056400 Sobic002G423600--Sobic005G182701 Sobic001G201800 Sobic001G201800 Sobic002G423600--Sobic001G201800 Sobic002G423600--Sobic001G012000 Sobic004G078600 Sobic004G078600 Sobic002G423600--Sobic004G078600 Sobic002G423600--Sobic004G217700 Sobic002G423600--Sobic007G055600 Sobic002G423600--SobicK044407 Sobic002G423600--Sobic006G045000 Sobic006G005500--Sobic001G125700 Sobic006G005500--Sobic005G219000 Sobic006G005500--Sobic008G028600 Sobic005G219100 Sobic005G219100 Sobic006G005500--Sobic005G219100 Sobic006G005500--Sobic007G076000 Sobic006G005500--Sobic002G040400 Sobic006G005500--Sobic007G055600 Sobic006G005400 Sobic006G005400 Sobic006G005500--Sobic006G005400 Sobic006G005500--Sobic006G007650 Sobic001G125700--Sobic006G005500 Sobic001G125700--Sobic005G219000 Sobic001G125700--Sobic005G219100 Sobic001G125700--Sobic008G028600 Sobic001G125700--Sobic007G076000 Sobic001G125700--Sobic002G040400 Sobic001G125700--Sobic006G005400 Sobic001G125700--Sobic007G055600 Sobic006G007100 Sobic006G007100 Sobic001G125700--Sobic006G007100
Octagon: transcription factors


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